9X8O | pdb_00009x8o

Structure of Candida aurisglycosylphosphatidylinositol transamidase

PDB DOI: https://doi.org/10.2210/pdb9X8O/pdb
EM Map EMD-66656: EMDB EMDataResource

Classification: MEMBRANE PROTEIN
Organism(s): Candidozyma auris
Expression System: Homo sapiens
Mutation(s): No

Deposited: 2025-10-19 Released: 2026-10-28
Deposition Author(s): Ding, X.Y., Hua, Z.K., Zhang, M.J., Zhang, M., Liu, X.T., Yu, H.J.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.19 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Structure of Candida auris glycosylphosphatidylinositol transamidase

Ding, X.Y., Hua, Z.K., Zhang, M.J., Zhang, M., Liu, X.T., Yu, H.J.

To be published.

Macromolecule Content

Total Structure Weight: 421.51 kDa
Atom Count: 18,688
Modeled Residue Count: 2,315
Deposited Residue Count: 3,696
Unique protein chains: 5

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Gpi16 subunit,Fusion protein	A	812	Candidozyma auris	Mutation(s): 0 Gene Names: QG37_04585
UniProt
Find proteins for A0A0L0NYC3 (Candidozyma auris) Explore A0A0L0NYC3 Go to UniProtKB: A0A0L0NYC3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A0L0NYC3
Glycosylation
Glycosylation Sites: 3	Glycosylation Focus chain A
Sequence Annotations Expand
Reference Sequence

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| 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Gaa1,Fusion protein	B [auth C]	834	Candidozyma auris	Mutation(s): 0 Gene Names: B9J08_001712, CA7LBN_001490
UniProt
Find proteins for A0A2H0ZYA8 (Candidozyma auris) Explore A0A2H0ZYA8 Go to UniProtKB: A0A2H0ZYA8
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A2H0ZYA8
Sequence Annotations Expand
Reference Sequence

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| 3D Structure

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Gab1,Fusion protein	C [auth D]	658	Candidozyma auris	Mutation(s): 0 Gene Names: QG37_00050
UniProt
Find proteins for A0A0L0P8H9 (Candidozyma auris) Explore A0A0L0P8H9 Go to UniProtKB: A0A0L0P8H9
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A0L0P8H9
Sequence Annotations Expand
Reference Sequence

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| 3D Structure

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
GPI transamidase component PIG-S,Fusion protein	D [auth E]	733	Candidozyma auris	Mutation(s): 0 Gene Names: B9J08_001705, CA7LBN_001496
UniProt
Find proteins for A0A2H0ZY68 (Candidozyma auris) Explore A0A2H0ZY68 Go to UniProtKB: A0A2H0ZY68
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A2H0ZY68
Sequence Annotations Expand
Reference Sequence

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| 3D Structure

Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
GPI-anchor transamidase,Fusion protein	E [auth F]	659	Candidozyma auris	Mutation(s): 0 Gene Names: B9J08_003157, B9J08_01015
UniProt
Find proteins for A0A0L0P4W1 (Candidozyma auris) Explore A0A0L0P4W1 Go to UniProtKB: A0A0L0P4W1
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A0L0P4W1
Glycosylation
Glycosylation Sites: 1	Glycosylation Focus chain E [auth F]
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 9 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
A1EZD( Subject of Investigation/LOI) Query on A1EZD Download:Ideal Coordinates CCD File SDF format, chain I [auth A] MOL2 format, chain I [auth A] mmCIF format, chain I [auth A]	I [auth A]	[(2~{R})-3-[[(1~{R},2~{S},3~{R},4~{R},5~{S},6~{R})-2-[(2~{R},3~{R},4~{R},5~{R},6~{R})-3-azanyl-5-[(2~{R},3~{S},4~{S},5~{S},6~{R})-3-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-6-(hydroxymethyl)-4,5-bis(oxidanyl)oxan-2-yl]oxy-6-(hydroxymethyl)-4-oxidanyl-oxan-2-yl]oxy-6-heptanoyloxy-3,4,5-tris(oxidanyl)cyclohexyl]oxy-oxidanyl-phosphoryl]oxy-2-butanoyloxy-propyl] heptanoate C₄₁ H₇₆ N₂ O₂₆ P₂ WUFALRMKBVZASY-OLSGVNHHSA-N		Interactions Focus chain I [auth A] Interactions & Density Focus chain I [auth A]
XKP (Subject of Investigation/LOI) Query on XKP Download:Ideal Coordinates CCD File SDF format, chain X [auth D] SDF format, chain P [auth C] SDF format, chain O [auth C] MOL2 format, chain X [auth D] MOL2 format, chain P [auth C] MOL2 format, chain O [auth C] mmCIF format, chain X [auth D] mmCIF format, chain P [auth C] mmCIF format, chain O [auth C]	O [auth C], P [auth C], X [auth D]	(11R,14S)-17-amino-14-hydroxy-8,14-dioxo-9,13,15-trioxa-14lambda~5~-phosphaheptadecan-11-yl decanoate C₂₃ H₄₆ N O₈ P VYUSSAVVRCGYLY-OAQYLSRUSA-N		Interactions Focus chain O [auth C] Focus chain P [auth C] Focus chain X [auth D] Interactions & Density Focus chain O [auth C] Focus chain P [auth C] Focus chain X [auth D]
CLR (Subject of Investigation/LOI) Query on CLR Download:Ideal Coordinates CCD File SDF format, chain W [auth D] MOL2 format, chain W [auth D] mmCIF format, chain W [auth D]	W [auth D]	CHOLESTEROL C₂₇ H₄₆ O HVYWMOMLDIMFJA-DPAQBDIFSA-N		Interactions Focus chain W [auth D] Interactions & Density Focus chain W [auth D]
NAG Query on NAG Download:Ideal Coordinates CCD File SDF format, chain Y [auth F] SDF format, chain H [auth A] SDF format, chain G [auth A] SDF format, chain F [auth A] MOL2 format, chain Y [auth F] MOL2 format, chain H [auth A] MOL2 format, chain G [auth A] MOL2 format, chain F [auth A] mmCIF format, chain Y [auth F] mmCIF format, chain H [auth A] mmCIF format, chain G [auth A] mmCIF format, chain F [auth A]	F [auth A], G [auth A], H [auth A], Y [auth F]	2-acetamido-2-deoxy-beta-D-glucopyranose C₈ H₁₅ N O₆ OVRNDRQMDRJTHS-FMDGEEDCSA-N		Interactions Focus chain F [auth A] Focus chain G [auth A] Focus chain H [auth A] Focus chain Y [auth F] Interactions & Density Focus chain F [auth A] Focus chain G [auth A] Focus chain H [auth A] Focus chain Y [auth F]
C14 Query on C14 Download:Ideal Coordinates CCD File SDF format, chain M [auth C] MOL2 format, chain M [auth C] mmCIF format, chain M [auth C]	M [auth C]	TETRADECANE C₁₄ H₃₀ BGHCVCJVXZWKCC-UHFFFAOYSA-N		Interactions Focus chain M [auth C] Interactions & Density Focus chain M [auth C]
D12 Query on D12 Download:Ideal Coordinates CCD File SDF format, chain S [auth D] SDF format, chain K [auth C] MOL2 format, chain S [auth D] MOL2 format, chain K [auth C] mmCIF format, chain S [auth D] mmCIF format, chain K [auth C]	K [auth C], S [auth D]	DODECANE C₁₂ H₂₆ SNRUBQQJIBEYMU-UHFFFAOYSA-N		Interactions Focus chain K [auth C] Focus chain S [auth D] Interactions & Density Focus chain K [auth C] Focus chain S [auth D]
DD9 Query on DD9 Download:Ideal Coordinates CCD File SDF format, chain U [auth D] SDF format, chain R [auth D] SDF format, chain Q [auth D] MOL2 format, chain U [auth D] MOL2 format, chain R [auth D] MOL2 format, chain Q [auth D] mmCIF format, chain U [auth D] mmCIF format, chain R [auth D] mmCIF format, chain Q [auth D]	Q [auth D], R [auth D], U [auth D]	nonane C₉ H₂₀ BKIMMITUMNQMOS-UHFFFAOYSA-N		Interactions Focus chain Q [auth D] Focus chain R [auth D] Focus chain U [auth D] Interactions & Density Focus chain Q [auth D] Focus chain R [auth D] Focus chain U [auth D]
HP6 Query on HP6 Download:Ideal Coordinates CCD File SDF format, chain V [auth D] SDF format, chain T [auth D] SDF format, chain N [auth C] SDF format, chain L [auth C] SDF format, chain J [auth C] MOL2 format, chain V [auth D] MOL2 format, chain T [auth D] MOL2 format, chain N [auth C] MOL2 format, chain L [auth C] MOL2 format, chain J [auth C] mmCIF format, chain V [auth D] mmCIF format, chain T [auth D] mmCIF format, chain N [auth C] mmCIF format, chain L [auth C] mmCIF format, chain J [auth C]	J [auth C], L [auth C], N [auth C], T [auth D], V [auth D]	HEPTANE C₇ H₁₆ IMNFDUFMRHMDMM-UHFFFAOYSA-N		Interactions Focus chain J [auth C] Focus chain L [auth C] Focus chain N [auth C] Focus chain T [auth D] Focus chain V [auth D] Interactions & Density Focus chain J [auth C] Focus chain L [auth C] Focus chain N [auth C] Focus chain T [auth D] Focus chain V [auth D]
CA Query on CA Download:Ideal Coordinates CCD File SDF format, chain Z [auth F] MOL2 format, chain Z [auth F] mmCIF format, chain Z [auth F]	Z [auth F]	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N		Interactions Focus chain Z [auth F] Interactions & Density Focus chain Z [auth F]