9T0J | pdb_00009t0j

Spraguea lophii ribosome dimer, conformation 2.

PDB DOI: https://doi.org/10.2210/pdb9T0J/pdb
EM Map EMD-55402: EMDB EMDataResource

Classification: RIBOSOME
Organism(s): Spraguea lophii 42_110
Mutation(s): No

Deposited: 2025-10-17 Released: 2026-10-28
Deposition Author(s): McLaren, M., Isupov, M.N., Daum, B., Conners, R.
Funding Organization(s): Wellcome Trust

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 10.9 Å
Aggregation State: CELL
Reconstruction Method: SUBTOMOGRAM AVERAGING

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

New clues about ribosome hibernation in microsporidia revealed by cryo-electron tomography

McLaren, M., Isupov, M.N., Daum, B., Conners, R.

To be published.

Macromolecule Content

Total Structure Weight: 5,629.18 kDa
Atom Count: 371,532
Modeled Residue Count: 32,682
Deposited Residue Count: 34,142
Unique protein chains: 76
Unique nucleic acid chains: 3

Macromolecules

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Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L12	C [auth D], DC [auth E]	164	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7W9J9 (Spraguea lophii (strain 42_110)) Explore S7W9J9 Go to UniProtKB: S7W9J9
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UniProt Group	S7W9J9
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Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein L34	D [auth LGG], EC [auth KGG]	106	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7W7C6 (Spraguea lophii (strain 42_110)) Explore S7W7C6 Go to UniProtKB: S7W7C6
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UniProt Group	S7W7C6
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Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S1	E [auth SB0], FC [auth RB0]	230	Spraguea lophii 42_110	Mutation(s): 0
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Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein uS5	F [auth SC0], GC [auth RC0]	248	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7W7R5 (Spraguea lophii (strain 42_110)) Explore S7W7R5 Go to UniProtKB: S7W7R5
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UniProt Group	S7W7R5
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Entity ID: 8
Molecule	Chains	Sequence Length	Organism	Details	Image
Elongation factor 2	H [auth A], IC [auth B]	847	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7XLX5 (Spraguea lophii (strain 42_110)) Explore S7XLX5 Go to UniProtKB: S7XLX5
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UniProt Group	S7XLX5
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Entity ID: 9
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L10a	I [auth L], JC [auth K]	210	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7W9N5 (Spraguea lophii (strain 42_110)) Explore S7W9N5 Go to UniProtKB: S7W9N5
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UniProt Group	S7W9N5
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Entity ID: 10
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein uL10	J [auth M], KC [auth N]	269	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7WBY5 (Spraguea lophii (strain 42_110)) Explore S7WBY5 Go to UniProtKB: S7WBY5
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UniProt Group	S7WBY5
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Entity ID: 11
Molecule	Chains	Sequence Length	Organism	Details	Image
Ubiquitin	K [auth LMM], LC [auth KMM]	127	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7XSQ3 (Spraguea lophii (strain 42_110)) Explore S7XSQ3 Go to UniProtKB: S7XSQ3
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UniProt Group	S7XSQ3
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Entity ID: 12
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S27	L [auth SBB], MC [auth RBB]	82	Spraguea lophii 42_110	Mutation(s): 0
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Entity ID: 13
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S26	M [auth SAA], NC [auth RAA]	102	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7W9M7 (Spraguea lophii (strain 42_110)) Explore S7W9M7 Go to UniProtKB: S7W9M7
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UniProt Group	S7W9M7
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Entity ID: 14
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L44	N [auth LOO], OC [auth KOO]	104	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7XL20 (Spraguea lophii (strain 42_110)) Explore S7XL20 Go to UniProtKB: S7XL20
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UniProt Group	S7XL20
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Entity ID: 15
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L37a	O [auth LPP], PC [auth KPP]	89	Spraguea lophii 42_110	Mutation(s): 0
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Entity ID: 16
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L37	P [auth LJJ], QC [auth KJJ]	92	Spraguea lophii 42_110	Mutation(s): 0
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Entity ID: 17
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L8	Q [auth LA0], RC [auth LA02]	246	Spraguea lophii 42_110	Mutation(s): 0
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Entity ID: 18
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L15	R [auth LAA], SC [auth KAA]	147	Spraguea lophii 42_110	Mutation(s): 0
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Entity ID: 19
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L3	S [auth LB0], TC [auth KB0]	392	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7XFB1 (Spraguea lophii (strain 42_110)) Explore S7XFB1 Go to UniProtKB: S7XFB1
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UniProt Group	S7XFB1
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Entity ID: 20
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein uL4	T [auth LC0], UC [auth KC0]	328	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7WCM8 (Spraguea lophii (strain 42_110)) Explore S7WCM8 Go to UniProtKB: S7WCM8
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UniProt Group	S7WCM8
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Entity ID: 21
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L3	U [auth LCC], VC [auth KCC]	110	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7WAY0 (Spraguea lophii (strain 42_110)) Explore S7WAY0 Go to UniProtKB: S7WAY0
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UniProt Group	S7WAY0
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Entity ID: 22
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L31	V [auth LDD], WC [auth KDD]	110	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7XW48 (Spraguea lophii (strain 42_110)) Explore S7XW48 Go to UniProtKB: S7XW48
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UniProt Group	S7XW48
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Entity ID: 23
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L6	W [auth LE0], XC [auth KE0]	171	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7W5S3 (Spraguea lophii (strain 42_110)) Explore S7W5S3 Go to UniProtKB: S7W5S3
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UniProt Group	S7W5S3
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Entity ID: 24
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein eL32	X [auth LEE], YC [auth KEE]	139	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7XKE0 (Spraguea lophii (strain 42_110)) Explore S7XKE0 Go to UniProtKB: S7XKE0
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UniProt Group	S7XKE0
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Entity ID: 25
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L7	Y [auth LF0], ZC [auth KF0]	235	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7W946 (Spraguea lophii (strain 42_110)) Explore S7W946 Go to UniProtKB: S7W946
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UniProt Group	S7W946
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Entity ID: 26
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L35a	AD [auth KFF], Z [auth LFF]	111	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7W662 (Spraguea lophii (strain 42_110)) Explore S7W662 Go to UniProtKB: S7W662
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UniProt Group	S7W662
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Entity ID: 27
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L8	AA [auth LG0], BD [auth KG0]	206	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7XU63 (Spraguea lophii (strain 42_110)) Explore S7XU63 Go to UniProtKB: S7XU63
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UniProt Group	S7XU63
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Entity ID: 28
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L9	BA [auth LH0], CD [auth KH0]	187	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7XRZ9 (Spraguea lophii (strain 42_110)) Explore S7XRZ9 Go to UniProtKB: S7XRZ9
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UniProt Group	S7XRZ9
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Entity ID: 29
Molecule	Chains	Sequence Length	Organism	Details	Image
60S Ribosomal L29 protein	CA [auth LHH], DD [auth KHH]	119	Spraguea lophii 42_110	Mutation(s): 0
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Entity ID: 30
Molecule	Chains	Sequence Length	Organism	Details	Image
S60 ribosomal protein L10	DA [auth LI0], ED [auth KI0]	218	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7WBF8 (Spraguea lophii (strain 42_110)) Explore S7WBF8 Go to UniProtKB: S7WBF8
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UniProt Group	S7WBF8
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Entity ID: 31
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L36	EA [auth LII], FD [auth KII]	98	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7WED1 (Spraguea lophii (strain 42_110)) Explore S7WED1 Go to UniProtKB: S7WED1
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UniProt Group	S7WED1
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Entity ID: 32
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L11	FA [auth LJ0], GD [auth KJ0]	171	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7WB69 (Spraguea lophii (strain 42_110)) Explore S7WB69 Go to UniProtKB: S7WB69
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UniProt Group	S7WB69
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Entity ID: 33
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L13	GA [auth LL0], HD [auth KL0]	165	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7XVM9 (Spraguea lophii (strain 42_110)) Explore S7XVM9 Go to UniProtKB: S7XVM9
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UniProt Group	S7XVM9
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Entity ID: 34
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L39	HA [auth LLL], ID [auth KLL]	52	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7XTP1 (Spraguea lophii (strain 42_110)) Explore S7XTP1 Go to UniProtKB: S7XTP1
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UniProt Group	S7XTP1
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Entity ID: 35
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L14	IA [auth LM0], JD [auth KM0]	122	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7XVN9 (Spraguea lophii (strain 42_110)) Explore S7XVN9 Go to UniProtKB: S7XVN9
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UniProt Group	S7XVN9
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Entity ID: 36
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein L15	JA [auth LN0], KD [auth KN0]	204	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7W7A2 (Spraguea lophii (strain 42_110)) Explore S7W7A2 Go to UniProtKB: S7W7A2
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UniProt Group	S7W7A2
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Entity ID: 37
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein L13A	KA [auth LO0], LD [auth KO0]	198	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7XUD8 (Spraguea lophii (strain 42_110)) Explore S7XUD8 Go to UniProtKB: S7XUD8
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UniProt Group	S7XUD8
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Entity ID: 38
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L17	LA [auth LP0], MD [auth KP0]	167	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7WDR4 (Spraguea lophii (strain 42_110)) Explore S7WDR4 Go to UniProtKB: S7WDR4
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UniProt Group	S7WDR4
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Entity ID: 39
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L18	MA [auth LQ0], ND [auth KQ0]	183	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7WAI2 (Spraguea lophii (strain 42_110)) Explore S7WAI2 Go to UniProtKB: S7WAI2
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UniProt Group	S7WAI2
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Entity ID: 40
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L19	NA [auth LR0], OD [auth KR0]	168	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7WBY9 (Spraguea lophii (strain 42_110)) Explore S7WBY9 Go to UniProtKB: S7WBY9
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UniProt Group	S7WBY9
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Entity ID: 41
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L20	OA [auth LS0], PD [auth KS0]	171	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7WAG4 (Spraguea lophii (strain 42_110)) Explore S7WAG4 Go to UniProtKB: S7WAG4
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UniProt Group	S7WAG4
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Entity ID: 42
Molecule	Chains	Sequence Length	Organism	Details	Image
60s ribosomal protein L21	PA [auth LT0], QD [auth KT0]	158	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7W8F6 (Spraguea lophii (strain 42_110)) Explore S7W8F6 Go to UniProtKB: S7W8F6
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UniProt Group	S7W8F6
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Entity ID: 43
Molecule	Chains	Sequence Length	Organism	Details	Image
Large ribosomal subunit protein eL22	QA [auth LU0], RD [auth KU0]	113	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7W958 (Spraguea lophii (strain 42_110)) Explore S7W958 Go to UniProtKB: S7W958
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UniProt Group	S7W958
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Entity ID: 44
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein L23	RA [auth LV0], SD [auth KV0]	142	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7XLC4 (Spraguea lophii (strain 42_110)) Explore S7XLC4 Go to UniProtKB: S7XLC4
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UniProt Group	S7XLC4
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Entity ID: 45
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein L24E	SA [auth LW0], TD [auth KW0]	131	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7XSY2 (Spraguea lophii (strain 42_110)) Explore S7XSY2 Go to UniProtKB: S7XSY2
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UniProt Group	S7XSY2
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Entity ID: 46
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L23a	TA [auth LX0], UD [auth KX0]	113	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7XFW8 (Spraguea lophii (strain 42_110)) Explore S7XFW8 Go to UniProtKB: S7XFW8
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UniProt Group	S7XFW8
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Entity ID: 47
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L26	UA [auth LY0], VD [auth KY0]	131	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7W884 (Spraguea lophii (strain 42_110)) Explore S7W884 Go to UniProtKB: S7W884
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UniProt Group	S7W884
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Entity ID: 48
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L27	VA [auth LZ0], WD [auth KZ0]	153	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7XU08 (Spraguea lophii (strain 42_110)) Explore S7XU08 Go to UniProtKB: S7XU08
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UniProt Group	S7XU08
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Entity ID: 49
Molecule	Chains	Sequence Length	Organism	Details	Image
DNL-type domain-containing protein MD1	WA [auth MD1], XD [auth ND1]	151	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7W5K5 (Spraguea lophii (strain 42_110)) Explore S7W5K5 Go to UniProtKB: S7W5K5
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UniProt Group	S7W5K5
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Entity ID: 50
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein uS2	XA [auth SA0], YD [auth RA0]	233	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7W8R1 (Spraguea lophii (strain 42_110)) Explore S7W8R1 Go to UniProtKB: S7W8R1
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UniProt Group	S7W8R1
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Entity ID: 51
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S28	YA [auth SCC], ZD [auth RCC]	65	Spraguea lophii 42_110	Mutation(s): 0
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Entity ID: 52
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S4	AE [auth RE0], ZA [auth SE0]	280	Spraguea lophii 42_110	Mutation(s): 0
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Find proteins for S7XG51 (Spraguea lophii (strain 42_110)) Explore S7XG51 Go to UniProtKB: S7XG51
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UniProt Group	S7XG51
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Entity ID: 53
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S30	AB [auth SEE], BE [auth REE]	60	Spraguea lophii 42_110	Mutation(s): 0
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Entity ID: 54
Molecule	Chains	Sequence Length	Organism	Details	Image
Guanine nucleotide binding protein beta subunit	BB [auth SGG], CE [auth RGG]	326	Spraguea lophii 42_110	Mutation(s): 0
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Find proteins for S7XVG3 (Spraguea lophii (strain 42_110)) Explore S7XVG3 Go to UniProtKB: S7XVG3
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UniProt Group	S7XVG3
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Entity ID: 55
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S8	CB [auth SI0], DE [auth RI0]	173	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7XGW2 (Spraguea lophii (strain 42_110)) Explore S7XGW2 Go to UniProtKB: S7XGW2
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UniProt Group	S7XGW2
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Entity ID: 56
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S9	DB [auth SJ0], EE [auth RJ0]	184	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7W8E3 (Spraguea lophii (strain 42_110)) Explore S7W8E3 Go to UniProtKB: S7W8E3
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UniProt Group	S7W8E3
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Entity ID: 57
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S10	EB [auth SK0], FE [auth RK0]	107	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7XU48 (Spraguea lophii (strain 42_110)) Explore S7XU48 Go to UniProtKB: S7XU48
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UniProt Group	S7XU48
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Entity ID: 58
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein uS17	FB [auth SL0], GE [auth RL0]	155	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7W8R0 (Spraguea lophii (strain 42_110)) Explore S7W8R0 Go to UniProtKB: S7W8R0
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UniProt Group	S7W8R0
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Entity ID: 59
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S12	GB [auth SM0], HE [auth RM0]	130	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7W7D2 (Spraguea lophii (strain 42_110)) Explore S7W7D2 Go to UniProtKB: S7W7D2
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UniProt Group	S7W7D2
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Entity ID: 60
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S13	HB [auth SN0], IE [auth RN0]	143	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7XVZ9 (Spraguea lophii (strain 42_110)) Explore S7XVZ9 Go to UniProtKB: S7XVZ9
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UniProt Group	S7XVZ9
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Entity ID: 61
Molecule	Chains	Sequence Length	Organism	Details	Image
Small ribosomal subunit protein uS11	IB [auth SO0], JE [auth RO0]	135	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7W6I0 (Spraguea lophii (strain 42_110)) Explore S7W6I0 Go to UniProtKB: S7W6I0
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UniProt Group	S7W6I0
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Entity ID: 62
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein S19	JB [auth SP0], KE [auth RP0]	163	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7XKY9 (Spraguea lophii (strain 42_110)) Explore S7XKY9 Go to UniProtKB: S7XKY9
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UniProt Group	S7XKY9
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Entity ID: 63
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S16	KB [auth SQ0], LE [auth RQ0]	143	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7WDU9 (Spraguea lophii (strain 42_110)) Explore S7WDU9 Go to UniProtKB: S7WDU9
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UniProt Group	S7WDU9
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Entity ID: 64
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S17	LB [auth SR0], ME [auth RR0]	120	Spraguea lophii 42_110	Mutation(s): 0
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Entity ID: 65
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S18	MB [auth SS0], NE [auth RS0]	160	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7XJA1 (Spraguea lophii (strain 42_110)) Explore S7XJA1 Go to UniProtKB: S7XJA1
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UniProt Group	S7XJA1
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Entity ID: 66
Molecule	Chains	Sequence Length	Organism	Details	Image
40S Ribosomal protein S19	NB [auth ST0], OE [auth RT0]	143	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7W7P5 (Spraguea lophii (strain 42_110)) Explore S7W7P5 Go to UniProtKB: S7W7P5
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UniProt Group	S7W7P5
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Entity ID: 67
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S20	OB [auth SU0], PE [auth RU0]	119	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7W986 (Spraguea lophii (strain 42_110)) Explore S7W986 Go to UniProtKB: S7W986
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UniProt Group	S7W986
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Entity ID: 68
Molecule	Chains	Sequence Length	Organism	Details	Image
Ribosomal protein S21E	PB [auth SV0], QE [auth RV0]	67	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7WAC1 (Spraguea lophii (strain 42_110)) Explore S7WAC1 Go to UniProtKB: S7WAC1
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UniProt Group	S7WAC1
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Entity ID: 69
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein uS12	QB [auth SX0], RE [auth RX0]	141	Spraguea lophii 42_110	Mutation(s): 0
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Entity ID: 70
Molecule	Chains	Sequence Length	Organism	Details	Image
40s ribosomal protein s24	RB [auth SY0], SE [auth RY0]	146	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7W8J5 (Spraguea lophii (strain 42_110)) Explore S7W8J5 Go to UniProtKB: S7W8J5
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UniProt Group	S7W8J5
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Entity ID: 71
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S25	SB [auth SZ0], TE [auth RZ0]	128	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7WAV8 (Spraguea lophii (strain 42_110)) Explore S7WAV8 Go to UniProtKB: S7WAV8
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UniProt Group	S7WAV8
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Entity ID: 72
Molecule	Chains	Sequence Length	Organism	Details	Image
60S ribosomal protein L5	TB [auth LD0], UE [auth KD0]	291	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7XIG7 (Spraguea lophii (strain 42_110)) Explore S7XIG7 Go to UniProtKB: S7XIG7
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UniProt Group	S7XIG7
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Entity ID: 73
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S29	UB [auth SDD], VE [auth RDD]	65	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7XJB1 (Spraguea lophii (strain 42_110)) Explore S7XJB1 Go to UniProtKB: S7XJB1
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UniProt Group	S7XJB1
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Entity ID: 74
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S3	VB [auth SD0], WE [auth RD0]	242	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7WAW0 (Spraguea lophii (strain 42_110)) Explore S7WAW0 Go to UniProtKB: S7WAW0
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UniProt Group	S7WAW0
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Entity ID: 75
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S6	WB [auth SG0], XE [auth RG0]	230	Spraguea lophii 42_110	Mutation(s): 0
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Entity ID: 76
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S7	XB [auth SH0], YE [auth RH0]	164	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7XV29 (Spraguea lophii (strain 42_110)) Explore S7XV29 Go to UniProtKB: S7XV29
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UniProt Group	S7XV29
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Entity ID: 77
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S15A	YB [auth SW0], ZE [auth RW0]	128	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7XK92 (Spraguea lophii (strain 42_110)) Explore S7XK92 Go to UniProtKB: S7XK92
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UniProt Group	S7XK92
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Entity ID: 78
Molecule	Chains	Sequence Length	Organism	Details	Image
40S ribosomal protein S5	AF [auth RF0], ZB [auth SF0]	195	Spraguea lophii 42_110	Mutation(s): 0
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UniProt Group	S7W4M9
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Entity ID: 79
Molecule	Chains	Sequence Length	Organism	Details	Image
Ubiquitin/40s ribosomal protein S27a fusion	AC [auth SFF], BF [auth RFF]	150	Spraguea lophii 42_110	Mutation(s): 0
UniProt
Find proteins for S7W9X5 (Spraguea lophii (strain 42_110)) Explore S7W9X5 Go to UniProtKB: S7W9X5
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UniProt Group	S7W9X5
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Molecule	Chains	Length	Organism
Entity ID: 1
RNA 23S	A [auth L50], BC [auth K50]	2,618	Spraguea lophii 42_110
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Molecule	Chains	Length	Organism
Entity ID: 2
RNA 16S	B [auth S60], CC [auth R60]	1,368	Spraguea lophii 42_110
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Molecule	Chains	Length	Organism
Entity ID: 7
RNA 5S	G [auth L70], HC [auth K70]	119	Spraguea lophii 42_110
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Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ZN (Subject of Investigation/LOI) Query on ZN Download:Ideal Coordinates CCD File SDF format, chain CF [auth LGG] SDF format, chain DF [auth LMM] SDF format, chain EF [auth SBB] SDF format, chain FF [auth SAA] SDF format, chain GF [auth LOO] SDF format, chain HF [auth LPP] SDF format, chain IF [auth LJJ] SDF format, chain JF [auth MD1] SDF format, chain KF [auth SFF] SDF format, chain LF [auth KGG] SDF format, chain MF [auth KMM] SDF format, chain NF [auth RBB] SDF format, chain OF [auth RAA] SDF format, chain PF [auth KOO] SDF format, chain QF [auth KPP] SDF format, chain RF [auth KJJ] SDF format, chain SF [auth ND1] SDF format, chain TF [auth RFF] MOL2 format, chain CF [auth LGG] MOL2 format, chain DF [auth LMM] MOL2 format, chain EF [auth SBB] MOL2 format, chain FF [auth SAA] MOL2 format, chain GF [auth LOO] MOL2 format, chain HF [auth LPP] MOL2 format, chain IF [auth LJJ] MOL2 format, chain JF [auth MD1] MOL2 format, chain KF [auth SFF] MOL2 format, chain LF [auth KGG] MOL2 format, chain MF [auth KMM] MOL2 format, chain NF [auth RBB] MOL2 format, chain OF [auth RAA] MOL2 format, chain PF [auth KOO] MOL2 format, chain QF [auth KPP] MOL2 format, chain RF [auth KJJ] MOL2 format, chain SF [auth ND1] MOL2 format, chain TF [auth RFF] mmCIF format, chain CF [auth LGG] mmCIF format, chain DF [auth LMM] mmCIF format, chain EF [auth SBB] mmCIF format, chain FF [auth SAA] mmCIF format, chain GF [auth LOO] mmCIF format, chain HF [auth LPP] mmCIF format, chain IF [auth LJJ] mmCIF format, chain JF [auth MD1] mmCIF format, chain KF [auth SFF] mmCIF format, chain LF [auth KGG] mmCIF format, chain MF [auth KMM] mmCIF format, chain NF [auth RBB] mmCIF format, chain OF [auth RAA] mmCIF format, chain PF [auth KOO] mmCIF format, chain QF [auth KPP] mmCIF format, chain RF [auth KJJ] mmCIF format, chain SF [auth ND1] mmCIF format, chain TF [auth RFF]	CF [auth LGG] DF [auth LMM] EF [auth SBB] FF [auth SAA] GF [auth LOO] CF [auth LGG], DF [auth LMM], EF [auth SBB], FF [auth SAA], GF [auth LOO], HF [auth LPP], IF [auth LJJ], JF [auth MD1], KF [auth SFF], LF [auth KGG], MF [auth KMM], NF [auth RBB], OF [auth RAA], PF [auth KOO], QF [auth KPP], RF [auth KJJ], SF [auth ND1], TF [auth RFF]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N		Interactions Focus chain CF [auth LGG] Focus chain DF [auth LMM] Focus chain EF [auth SBB] Focus chain FF [auth SAA] Focus chain GF [auth LOO] Focus chain HF [auth LPP] Focus chain IF [auth LJJ] Focus chain JF [auth MD1] Focus chain KF [auth SFF] Focus chain LF [auth KGG] Focus chain MF [auth KMM] Focus chain NF [auth RBB] Focus chain OF [auth RAA] Focus chain PF [auth KOO] Focus chain QF [auth KPP] Focus chain RF [auth KJJ] Focus chain SF [auth ND1] Focus chain TF [auth RFF] Interactions & Density Focus chain CF [auth LGG] Focus chain DF [auth LMM] Focus chain EF [auth SBB] Focus chain FF [auth SAA] Focus chain GF [auth LOO] Focus chain HF [auth LPP] Focus chain IF [auth LJJ] Focus chain JF [auth MD1] Focus chain KF [auth SFF] Focus chain LF [auth KGG] Focus chain MF [auth KMM] Focus chain NF [auth RBB] Focus chain OF [auth RAA] Focus chain PF [auth KOO] Focus chain QF [auth KPP] Focus chain RF [auth KJJ] Focus chain SF [auth ND1] Focus chain TF [auth RFF]

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 10.9 Å
Aggregation State: CELL
Reconstruction Method: SUBTOMOGRAM AVERAGING

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	UCSF ChimeraX
MODEL REFINEMENT	ISOLDE
MODEL REFINEMENT	REFMAC
RECONSTRUCTION	M

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2026-10-28

Deposition Author(s):

Funding Organization	Location	Grant Number
Wellcome Trust	United Kingdom	212439/Z/18/Z

Revision History (Full details and data files)

Version 1.0: 2026-10-28
Type: Initial release

9T0J | pdb_00009t0j

Spraguea lophii ribosome dimer, conformation 2.

Literature

New clues about ribosome hibernation in microsporidia revealed by cryo-electron tomography

Biological Assembly 1

Macromolecules

Entity ID: 3

UniProt

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Entity ID: 4

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Entity ID: 5

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Entity ID: 6

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Entity ID: 8

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Entity ID: 9

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Entity ID: 10

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Entity ID: 11

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Entity ID: 12

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Entity ID: 13

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Entity ID: 14

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Entity ID: 15

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Entity ID: 16

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Entity ID: 17

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Entity ID: 18

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Entity ID: 19

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Entity ID: 20

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Entity ID: 21

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Entity ID: 22

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Entity ID: 23

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