9R0V | pdb_00009r0v

CutC IN COMPLEX WITH Inhibitor


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.34 Å
  • R-Value Free: 
    0.194 (Depositor), 0.188 (DCC) 
  • R-Value Work: 
    0.176 (Depositor), 0.170 (DCC) 
  • R-Value Observed: 
    0.177 (Depositor) 

Starting Model: experimental
View more details

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Discovery of a Highly Potent and Selective Small-Molecule Inhibitor of In Vivo Anaerobic Choline Metabolism by Human Gut Bacteria.

Pettersson, M.La Sala, G.Gunnarsson, A.Vildhede, A.Sparklin, B.Holm, B.Petrovic, D.Lasky, G.Turick, S.Szydlowska, M.Gopalakrishnan, V.Bake, T.Petersen, J.Branalt, J.Westerlund, K.Taillefer, M.Henricsson, M.Ek, M.Warrener, P.Roth, R.Cohen, T.Sjogren, T.Fahlander, U.Jurva, U.Morias, Y.Liddle, J.

(2026) J Med Chem 

  • DOI: https://doi.org/10.1021/acs.jmedchem.5c01451
  • Primary Citation of Related Structures:  
    9R0V

  • PubMed Abstract: 

    Trimethylamine (TMA) Lyase is an enzyme expressed in human gut bacteria that plays a pivotal role in the formation of trimethylamine oxide (TMAO), a metabolite implicated in the development of heart failure. Here, we describe a strategy to design covalent inhibitors targeting the active site thiyl radical involved in the catalytic cycle of the enzyme under anaerobic conditions. This strategy led to the discovery of 7 , a previously unreported highly potent and selective inhibitor of TMA Lyase. When dosed orally to rats, 7 shows a significant reduction of circulating TMAO levels and, importantly, demonstrates inhibition of TMAO generated from a human microbiome when profiled in a human fecal mouse transplant model.


  • Organizational Affiliation
    • Medicinal Chemistry, Research and Early Development, Cardiovascular, Renal and Metabolic Diseases, BioPharmaceuticals R&D, AstraZeneca, Gothenburg 431 83, Sweden.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Choline trimethylamine-lyase
A, B, C, D
801Oleidesulfovibrio alaskensisMutation(s): 0 
Gene Names: cutCDde_3282
EC: 4.3.99.4
UniProt
Find proteins for Q30W70 (Oleidesulfovibrio alaskensis (strain ATCC BAA-1058 / DSM 17464 / G20))
Explore Q30W70 
Go to UniProtKB:  Q30W70
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ30W70
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.34 Å
  • R-Value Free:  0.194 (Depositor), 0.188 (DCC) 
  • R-Value Work:  0.176 (Depositor), 0.170 (DCC) 
  • R-Value Observed: 0.177 (Depositor) 
Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 80.05α = 90
b = 231.711β = 111.08
c = 105.887γ = 90
Software Package:
Software NamePurpose
BUSTERrefinement
Aimlessdata scaling
MOLREPphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data

  • Released Date: 2026-02-11 
  • Deposition Author(s): Petersen, J.

Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2026-02-11
    Type: Initial release