9GZQ | pdb_00009gzq

Structure of ForCE lacking the Helical Membrane Plug-in (HMP; DUF1641)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.63 Å
  • R-Value Free: 
    0.320 (Depositor), 0.314 (DCC) 
  • R-Value Work: 
    0.280 (Depositor), 0.279 (DCC) 
  • R-Value Observed: 
    0.282 (Depositor) 

Starting Model: experimental
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Ligand Structure Quality Assessment 


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Literature

A scaffold for quinone channeling between membrane and soluble bacterial oxidoreductases.

Broc, M.Cherrier, M.V.Uzel, A.Arias-Cartin, R.Arnoux, P.Brasseur, G.Seduk, F.Guigliarelli, B.Legrand, P.Pierrel, F.Schoehn, G.Mate, M.J.Martin, L.Grimaldi, S.Nicolet, Y.Magalon, A.Walburger, A.

(2025) Nat Struct Mol Biol 

  • DOI: https://doi.org/10.1038/s41594-025-01607-4
  • Primary Citation of Related Structures:  
    8RQZ, 8RR0, 9GZQ

  • PubMed Abstract: 

    Redox processes are at the heart of energetic metabolism that drives life on earth. By extension, complex and efficient electron transfer wires are necessary to connect the various metabolic pathways that are often located in distinct cellular compartments. Here, we uncovered a structural module that enables channeling of quinones from the membrane to various water-soluble redox catalytic units in prokaryotes. Using X-ray crystallography and cryo-electron microscopy, we determined the structure of the unusual bacterial formate dehydrogenase ForCE that contains four ForC catalytic subunits docked around a membrane-associated tetrameric ForE central scaffold. In the latter, a conserved domain that we propose to name helical membrane plugin (HMP) was identified as essential to link formate oxidation, in Bacillus subtilis, to the aerobic respiratory chain. Our bioinformatic analysis indicates that this HMP is associated with different quinone-reducing oxidoreductases, highlighting its broad importance as a functional unit to wire electrons between a given catalytic redox center and the quinone pool.


  • Organizational Affiliation
    • Aix Marseille Univ, CNRS, LCB, IMM, IM2B, Marseille, France.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Probable oxidoreductase YjgC1,001Bacillus subtilisMutation(s): 0 
Gene Names: yjgCBSU12160
EC: 1
UniProt
Find proteins for O34720 (Bacillus subtilis (strain 168))
Explore O34720 
Go to UniProtKB:  O34720
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO34720
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
ForE1186Bacillus subtilisMutation(s): 0 
Gene Names: yjgDBSU12170
UniProt
Find proteins for O34681 (Bacillus subtilis (strain 168))
Explore O34681 
Go to UniProtKB:  O34681
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO34681
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 4 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
MGD (Subject of Investigation/LOI)
Query on MGD

Download Ideal Coordinates CCD File 
H [auth A],
I [auth A]
2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE
C20 H26 N10 O13 P2 S2
VQAGYJCYOLHZDH-ILXWUORBSA-N
SF4 (Subject of Investigation/LOI)
Query on SF4

Download Ideal Coordinates CCD File 
D [auth A],
E [auth A],
F [auth A],
G [auth A]
IRON/SULFUR CLUSTER
Fe4 S4
LJBDFODJNLIPKO-UHFFFAOYSA-N
FES
Query on FES

Download Ideal Coordinates CCD File 
C [auth A]FE2/S2 (INORGANIC) CLUSTER
Fe2 S2
NIXDOXVAJZFRNF-UHFFFAOYSA-N
4MO (Subject of Investigation/LOI)
Query on 4MO

Download Ideal Coordinates CCD File 
J [auth A]MOLYBDENUM(IV) ION
Mo
ZIKKVZAYJJZBGE-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.63 Å
  • R-Value Free:  0.320 (Depositor), 0.314 (DCC) 
  • R-Value Work:  0.280 (Depositor), 0.279 (DCC) 
  • R-Value Observed: 0.282 (Depositor) 
Space Group: I 4 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 215.909α = 90
b = 215.909β = 90
c = 215.528γ = 90
Software Package:
Software NamePurpose
BUSTERrefinement
XDSdata reduction
Aimlessdata scaling
MOLREPphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Agence Nationale de la Recherche (ANR)FranceANR-22-CE44-0035-01

Revision History  (Full details and data files)

  • Version 1.0: 2025-09-10
    Type: Initial release