Download MendeleyCrystal structure of the ILK mutant (R371Q)/alpha-parvin core complex bound to gefitinib
Fukdua, K., Qin, J.To be published.
9D5H | pdb_00009d5h
Crystal structure of the ILK mutant (R371Q)/alpha-parvin core complex bound to gefitinib
- PDB DOI: https://doi.org/10.2210/pdb9D5H/pdb
- Classification: TRANSFERASE/INHIBITOR
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2024-08-13 Released: 2025-10-29
- Funding Organization(s): National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.224 (Depositor), 0.224 (DCC)
- R-Value Work: 0.195 (Depositor), 0.195 (DCC)
- R-Value Observed: 0.197 (Depositor)
Starting Model: experimental
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This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Integrin-linked protein kinase | 271 | Homo sapiens | Mutation(s): 3 Gene Names: ILK, ILK1, ILK2 EC: 2.7.11.1 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q13418 (Homo sapiens) Explore Q13418 Go to UniProtKB: Q13418 | |||||
PHAROS: Q13418 GTEx: ENSG00000166333 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q13418 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Alpha-parvin | 129 | Homo sapiens | Mutation(s): 0 Gene Names: PARVA, MXRA2 |  | |
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9NVD7 (Homo sapiens) Explore Q9NVD7 Go to UniProtKB: Q9NVD7 | |||||
PHAROS: Q9NVD7 GTEx: ENSG00000197702 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9NVD7 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| IRE (Subject of Investigation/LOI) Query on IRE | C [auth A] | Gefitinib C22 H24 Cl F N4 O3 XGALLCVXEZPNRQ-UHFFFAOYSA-N |  | ||
| B3P (Subject of Investigation/LOI) Query on B3P | D [auth B] | 2-[3-(2-HYDROXY-1,1-DIHYDROXYMETHYL-ETHYLAMINO)-PROPYLAMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL C11 H26 N2 O6 HHKZCCWKTZRCCL-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.224 (Depositor), 0.224 (DCC)
- R-Value Work: 0.195 (Depositor), 0.195 (DCC)
- R-Value Observed: 0.197 (Depositor)
Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 44.154 | α = 90 |
| b = 118.355 | β = 100.82 |
| c = 47.452 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2025-10-29 Deposition Author(s): Fukuda, K., Qin, J.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI) | United States | 2R01HL058758-23A1 |
Revision History (Full details and data files)
- Version 1.0: 2025-10-29
Type: Initial release
