5L2V | pdb_00005l2v

Catalytic domain of LPMO Lmo2467 from Listeria monocytogenes

• PDB DOI: https://doi.org/10.2210/pdb5L2V/pdb

• Classification: CHITIN-BINDING PROTEIN
• Organism(s): Listeria monocytogenes 10403S
• Expression System: Escherichia coli BL21
• Mutation(s): No 


• Deposited: 2016-08-02 Released: 2017-08-09 
• Deposition Author(s): Light, S.H., Agostoni, M., Marletta, M.A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.10 Å
• R-Value Free: 
  0.145 (Depositor), 0.150 (DCC) 
• R-Value Work: 
  0.129 (Depositor), 0.130 (DCC) 
• R-Value Observed: 
  0.129 (Depositor) 

Starting Model: experimental

Literature

Catalytic domain of LPMO Lmo2467 from Listeria monocytogenes

Light, S.H., Agostoni, M., Marletta, M.A., Anderson, W.F.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 36.24 kDa 
• Atom Count: 3,322 
• Modeled Residue Count: 332 
• Deposited Residue Count: 332 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Chitin-binding protein	A, B	166	Listeria monocytogenes 10403S	Mutation(s): 0  Gene Names: LMRG_01781
UniProt
Find proteins for A0A0H3GIZ6 (Listeria monocytogenes serotype 1/2a (strain 10403S)) Explore A0A0H3GIZ6  Go to UniProtKB:  A0A0H3GIZ6

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
P33	D [auth A]	3,6,9,12,15,18-HEXAOXAICOSANE-1,20-DIOL C14 H30 O8 XPJRQAIZZQMSCM-UHFFFAOYSA-N
CU	C [auth A], E [auth B]	COPPER (II) ION Cu JPVYNHNXODAKFH-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.10 Å
• R-Value Free:  0.145 (Depositor), 0.150 (DCC) 
• R-Value Work:  0.129 (Depositor), 0.130 (DCC) 
• R-Value Observed: 0.129 (Depositor) 

Diffraction Data: https://doi.org/10.18430/m35l2v

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 61.575	α = 90
b = 139.712	β = 90
c = 90.591	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2017-08-09 
Deposition Author(s): Light, S.H., Agostoni, M., Marletta, M.A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History  

• Version 1.0: 2017-08-09
  Type: Initial release
  
• Version 1.1: 2023-10-04
  Changes: Data collection, Database references, Derived calculations, Refinement description, Structure summary