4NCP | pdb_00004ncp

Crystal Structure of 4-HBT like thioesterase SAV1878 from Staphylococcus aureus subsp. aureus Mu50

PDB DOI: https://doi.org/10.2210/pdb4NCP/pdb

Classification: UNKNOWN FUNCTION
Organism(s): Staphylococcus aureus subsp. aureus Mu50
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2013-10-24 Released: 2014-11-05
Deposition Author(s): Khandokar, Y.B., Forwood, J.K.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free:
0.245 (Depositor), 0.250 (DCC)
R-Value Work:
0.207 (Depositor), 0.210 (DCC)
R-Value Observed:
0.209 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Expression, purification, crystallization, and X-ray diffraction analysis of hypothetical protein SAV1878 from Staphylococcus aureus subsp. aureus Mu50

Khandokar, Y.B., Forwood, J.K.

To be published.

Macromolecule Content

Total Structure Weight: 121.59 kDa
Atom Count: 7,868
Modeled Residue Count: 972
Deposited Residue Count: 1,074
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Uncharacterized protein	A, B, C, D, E A, B, C, D, E, F	179	Staphylococcus aureus subsp. aureus Mu50	Mutation(s): 0 Gene Names: SAV1878
UniProt
Find proteins for A0A0H3K033 (Staphylococcus aureus (strain Mu50 / ATCC 700699)) Explore A0A0H3K033 Go to UniProtKB: A0A0H3K033
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A0A0H3K033
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.245 (Depositor), 0.250 (DCC)
R-Value Work: 0.207 (Depositor), 0.210 (DCC)
R-Value Observed: 0.209 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 49.93	α = 90
b = 128.5	β = 102.78
c = 83.54	γ = 90

Software Package:

Software Name	Purpose
Blu-Ice	data collection
CCP4	model building
REFMAC	refinement
MOSFLM	data reduction
SCALA	data scaling
CCP4	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2014-11-05

Deposition Author(s):

Khandokar, Y.B.

Revision History (Full details and data files)

Version 1.0: 2014-11-05
Type: Initial release
Version 1.1: 2017-11-15
Changes: Advisory, Refinement description
Version 1.2: 2023-09-20
Changes: Advisory, Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.