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 43JG | pdb_000043jg

Cryo-EM structure of bacteriophage Avs-1 distal tail protein

  • Classification: VIRAL PROTEIN
  • Organism(s): Aeromonas veronii
  • Mutation(s): No 

  • Deposited: 2026-07-03 Released: 2026-09-23 
  • Deposition Author(s): Liu, J.Y., Liu, H.R.
  • Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.62 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

Validation slider image for 43JG

This is version 1.1 of the entry. See complete history. 

Literature

Cryo-EM Structure of Siphophage Avs-1 Reveals a Conserved Virion Architecture with a Specialized Tripod-like Tail Tip for Host Recognition.

Liu, J., Li, C., Yang, X., Yang, F., Liu, H.

(2026) Viruses 18

  • DOI: https://doi.org/10.3390/v18091011
  • Primary Citation Related Structures: 
    43JF, 43JG, 43JH

  • PubMed Abstract: 

    Bacteriophages are increasingly considered viable alternatives to antibiotics for controlling aquaculture pathogens, yet the structural basis of siphophage infection in aquatic bacteria remains largely unexplored. Here, we present the near-atomic-resolution cryo-electron microscopy structure of Avs-1, a siphophage infecting the freshwater aquaculture pathogen Aeromonas veronii . The capsid reconstruction at 2.98 Å and spike structure at 3.58 Å reveal a virion architecture broadly conserved among lambda-like siphophages, including an HK97-fold capsid, a canonical portal-neck complex, and a tail tube composed of approximately 26 stacked hexameric rings. However, the distal tail tip exhibits pronounced specialization, assembling into a C3-symmetric tripod-like core formed by the distal tail protein, hub protein, insertion protein, and the C-terminus of the tape measure protein. The trimeric spike protein gp43 extends from this platform and adopts a β-helical scaffold with a structurally divergent distal domain (D4), highlighting the structural diversity of phage tail-tip architectures. Together, these results reveal how a largely conserved virion framework is combined with a diversified distal tail apparatus, expanding the structural repertoire of characterized siphophages and providing a framework for investigating the molecular basis of phage-host interactions.


  • Organizational Affiliation: 
    • Key Laboratory for Matter Microstructure and Function of Hunan Province, School of Physics and Electronics, Hunan Normal University, Changsha 410081, China.

Macromolecule Content 

  • Total Structure Weight: 18.38 kDa 
  • Atom Count: 1,220 
  • Modeled Residue Count: 153 
  • Deposited Residue Count: 164 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Distal tail proteinA [auth B]164Aeromonas veroniiMutation(s): 0 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.62 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONcryoSPARC

Structure Validation

View Full Validation Report



Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China12034006
National Natural Science Foundation of China (NSFC)China32430020

Revision History  (Full details and data files)

  • Version 1.0: 2026-09-23
    Type: Initial release
  • Version 1.1: 2026-10-14
    Changes: Database references