Download MendeleyStructural and Catalytic Characterization of Pichia stipitis OYE 2.6, a Useful Biocatalyst for Asymmetric Alkene Reductions
Pompeu, Y.A., Sullivan, B., Walton, A.Z., Stewart, J.D.(2012) Adv Synth Catal
3TJL | pdb_00003tjl
Crystal Structure of a Novel OYE from the Xylose-fermenting Fungus P. stipitis
- PDB DOI: https://doi.org/10.2210/pdb3TJL/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Scheffersomyces stipitis CBS 6054
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes
- Deposited: 2011-08-24 Released: 2012-07-11
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.168 (Depositor), 0.160 (DCC)
- R-Value Work: 0.143 (Depositor), 0.140 (DCC)
- R-Value Observed: 0.145 (Depositor)
Starting Model: experimental
View more details
This is version 1.3 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| NADPH dehydrogenase | 407 | Scheffersomyces stipitis CBS 6054 | Mutation(s): 1 Gene Names: OYE2.6, PICST_44614 EC: 1.6.99.1 |  | |
UniProt | |||||
Find proteins for A3LT82 (Scheffersomyces stipitis (strain ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545)) Explore A3LT82 Go to UniProtKB: A3LT82 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A3LT82 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| FMN Query on FMN | B [auth A] | FLAVIN MONONUCLEOTIDE C17 H21 N4 O9 P FVTCRASFADXXNN-SCRDCRAPSA-N |  | ||
| MLA Query on MLA | G [auth A], H [auth A], I [auth A] | MALONIC ACID C3 H4 O4 OFOBLEOULBTSOW-UHFFFAOYSA-N |  | ||
| NA Query on NA | C [auth A], D [auth A], E [auth A], F [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.50 Å
- R-Value Free: 0.168 (Depositor), 0.160 (DCC)
- R-Value Work: 0.143 (Depositor), 0.140 (DCC)
- R-Value Observed: 0.145 (Depositor)
Space Group: P 63 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 127.164 | α = 90 |
| b = 127.164 | β = 90 |
| c = 122.457 | γ = 120 |
| Software Name | Purpose |
|---|---|
| CBASS | data collection |
| MOLREP | phasing |
| PHENIX | refinement |
| HKL-3000 | data reduction |
| HKL-3000 | data scaling |
Entry History
Deposition Data
- Released Date: 2012-07-11 Deposition Author(s): Pompeu, Y.A., Stewart, J.D.
Revision History (Full details and data files)
- Version 1.0: 2012-07-11
Type: Initial release - Version 1.1: 2014-07-23
Changes: Derived calculations - Version 1.2: 2015-04-29
Changes: Non-polymer description - Version 1.3: 2023-09-13
Changes: Data collection, Database references, Derived calculations, Refinement description
