3FK5 | pdb_00003fk5

Crystal structure of 3-oxoacyl-(acyl carrier protein) synthase III, FabH (Xoo4209) from Xanthomonas oryzae pv. oryzae KACC10331

• PDB DOI: https://doi.org/10.2210/pdb3FK5/pdb

• Classification: TRANSFERASE
• Organism(s): Xanthomonas oryzae pv. oryzae
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2008-12-16 Released: 2009-12-22 
• Deposition Author(s): Natarajan, S., Huynh, K.-H., Kang, L.W.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.05 Å
• R-Value Free: 
  0.237 (Depositor), 0.240 (DCC) 
• R-Value Work: 
  0.174 (Depositor), 0.170 (DCC) 
• R-Value Observed: 
  0.177 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of 3-oxoacyl-(acyl carrier protein) synthase III, FabH (Xoo4209) from Xanthomonas oryzae pv. oryzae KACC10331

Natarajan, S., Huynh, K.-H., Kang, L.W.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 2 generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 36.49 kDa 
• Atom Count: 2,801 
• Modeled Residue Count: 338 
• Deposited Residue Count: 338 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
3-oxoacyl-synthase III	A	338	Xanthomonas oryzae pv. oryzae	Mutation(s): 0  Gene Names: fabH, XOO4209 EC: 2.3.1.41
UniProt
Find proteins for Q5GV10 (Xanthomonas oryzae pv. oryzae (strain KACC10331 / KXO85)) Explore Q5GV10  Go to UniProtKB:  Q5GV10

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.05 Å
• R-Value Free:  0.237 (Depositor), 0.240 (DCC) 
• R-Value Work:  0.174 (Depositor), 0.170 (DCC) 
• R-Value Observed: 0.177 (Depositor) 

Space Group: P 2₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 69.75	α = 90
b = 79.45	β = 90
c = 62.29	γ = 90

Software Package:

Software Name	Purpose
ADSC	data collection
BALBES	phasing
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2009-12-22 
Deposition Author(s): Natarajan, S., Huynh, K.-H., Kang, L.W.

Revision History  

• Version 1.0: 2009-12-22
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2023-11-01
  Changes: Data collection, Database references, Refinement description