25YL | pdb_000025yl

Structure of human PADI6

PDB DOI: https://doi.org/10.2210/pdb25YL/pdb
EM Map EMD-80475: EMDB EMDataResource

Classification: LIGASE
Organism(s): Homo sapiens
Expression System: Spodoptera frugiperda
Mutation(s): No

Deposited: 2026-04-22 Released: 2026-10-14
Deposition Author(s): Li, J., Deng, D.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.80 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 25YL

This is version 1.0 of the entry. See complete history.

Literature

Molecular basis of PADI6 species-specific oligomerization in maternal regulatory complexes

Li, J., Deng, D.

To be published.

Macromolecule Content

Total Structure Weight: 153.95 kDa
Atom Count: 10,788
Modeled Residue Count: 1,371
Deposited Residue Count: 1,372
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Inactive protein-arginine deiminase type-6	A, B	686	Homo sapiens	Mutation(s): 0 Gene Names: PADI6, PAD6
UniProt & NIH Common Fund Data Resources
Find proteins for Q6TGC4 (Homo sapiens) Explore Q6TGC4 Go to UniProtKB: Q6TGC4
PHAROS: Q6TGC4 GTEx: ENSG00000276747
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q6TGC4
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 2.80 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
MODEL REFINEMENT	PHENIX	1.20.1_4487
RECONSTRUCTION	cryoSPARC

Structure Validation

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View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2026-10-14

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	31871449

Revision History (Full details and data files)

Version 1.0: 2026-10-14
Type: Initial release