22ZW | pdb_000022zw

norovirus GII24 P domain


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free: 
    0.286 (Depositor), 0.288 (DCC) 
  • R-Value Work: 
    0.232 (Depositor), 0.242 (DCC) 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

GII.23/24/25 noroviruses recognize glycans via a conventional glycan-binding site.

Li, H.Cong, X.Sun, X.Qi, J.Li, X.Jin, M.Duan, Z.

(2026) Front Microbiol 17: 1767002-1767002

  • DOI: https://doi.org/10.3389/fmicb.2026.1767002
  • Primary Citation Related Structures: 
    22WZ, 22XH, 22ZV, 22ZW

  • PubMed Abstract: 

    Human noroviruses (HuNoVs) are genetically diverse RNA viruses that cause acute gastroenteritis, with genogroup II (GII) accounting for over 90% of global infections. Glycans, particularly histo-blood group antigens (HBGAs), have been identified as attachment factors or receptors for HuNoVs infection. However, the glycan-binding receptors of the later-identified GII genotypes GII.23/24/25 remain elusive. We used saliva- and glycan-based ELISA assays to identify the binding spectra of GII.23/24/25 strains. We also solved the crystal structures of their P domains, including the GII.25 P domain in complex with the H disaccharide. Single-point mutagenesis was performed to identify key residues involved in glycan binding. The P domains of GII.24 and GII.25 can recognize multiple types of saliva samples, including both A/B/O secretor and nonsecretor individuals. In contrast, GII.23 primarily binds to B secretor saliva samples. Furthermore, GII.23/24 P domains are able to interact with the H disaccharide, whereas GII.25 exhibits binding affinity for both H disaccharide and B trisaccharide. Crystal structures of GII.23/24/25 P domains revealed high structural similarity, and the complex of GII.25 P domains with H disaccharide was resolved. Single-point mutagenesis identified N352, R353, D382, G443, G444, and H445 as critical residues for H disaccharide binding in GII.25 P domain, while A351 determines glycan-binding specificity. Our findings demonstrate that GII.23/24/25 exhibit glycan-binding patterns similar to most other GII HuNoV genotypes. The structural insights provide a better understanding of virus-host evolution and inform the development of therapeutic strategies against HuNoVs.


  • Organizational Affiliation
    • Guangdong Provincial Key Laboratory of Agro-Animal Genomics and Molecular Breeding, College of Animal Science, South China Agricultural University, Guangzhou, China.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Major capsid protein
A, B
311Norovirus GIIMutation(s): 0 
Gene Names: ORF2
UniProt
Find proteins for A0A1V0QSQ1 (Norovirus GII)
Explore A0A1V0QSQ1 
Go to UniProtKB:  A0A1V0QSQ1
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A1V0QSQ1
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.35 Å
  • R-Value Free:  0.286 (Depositor), 0.288 (DCC) 
  • R-Value Work:  0.232 (Depositor), 0.242 (DCC) 
Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 73.629α = 90
b = 80.304β = 90
c = 134.287γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
PHENIXphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China32100111

Revision History  (Full details and data files)

  • Version 1.0: 2026-02-25
    Type: Initial release
  • Version 1.1: 2026-04-01
    Changes: Database references