12DS | pdb_000012ds

In situ cryo-EM structure of the MS RBM12 inner ring of the flagellar motor in Borrelia burgdorferi

PDB DOI: https://doi.org/10.2210/pdb12DS/pdb
EM Map EMD-76345: EMDB EMDataResource

Classification: STRUCTURAL PROTEIN
Organism(s): Borreliella burgdorferi B31
Mutation(s): No

Deposited: 2026-03-30 Released: 2026-08-26
Deposition Author(s): Yue, J., Liu, Y.
Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.25 Å
Aggregation State: CELL
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

Validation slider image for 12DS

This is version 1.0 of the entry. See complete history.

Literature

Coordinated assembly of the export apparatus and MS-ring drives extensive membrane remodeling

Yue, J., Liu, J.

To be published.

Macromolecule Content

Total Structure Weight: 1,500.04 kDa
Atom Count: 37,536
Modeled Residue Count: 4,807
Deposited Residue Count: 13,087
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Flagellar M-ring protein	A [auth B] B [auth C] C [auth D] D [auth E] E [auth F] A [auth B], B [auth C], C [auth D], D [auth E], E [auth F], F [auth G], G [auth H], H [auth I], I [auth J], J [auth K], K [auth L], L [auth M], M [auth N], N [auth O], O [auth P], P [auth Q], Q [auth R], R [auth S], S [auth T], T [auth U], U [auth V], V [auth W], W [auth X]	569	Borreliella burgdorferi B31	Mutation(s): 0
UniProt
Find proteins for Q44912 (Borreliella burgdorferi (strain ATCC 35210 / DSM 4680 / CIP 102532 / B31)) Explore Q44912 Go to UniProtKB: Q44912
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q44912
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.25 Å
Aggregation State: CELL
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
RECONSTRUCTION	cryoSPARC	4.7
MODEL REFINEMENT	PHENIX	1.21.2_5419

Structure Validation

View Full Validation Report

View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2026-08-26

Deposition Author(s):

Funding Organization	Location	Grant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)	United States	R01AI087946

Revision History (Full details and data files)

Version 1.0: 2026-08-26
Type: Initial release

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.