Explore Distance, Angle, and Dihedral Measurements

09/25

Measuring a distance between phytic acid and the catylitic histidine in the active site of phytase using the Ligand View option in NGL (PDB structure 1dkq). More on phytase at Molecule of the Month.

To begin a measurement in the NGL Ligand View, use the right-mouse button (or the left-mouse button and the Control key/Control key and mouse click) to select 1, 2, 3 or 4 atoms. Complete the measurement by selecting the final atom twice. Depending on how many atoms are selected, the distance (2 atoms), the angle (3 atoms) or the dihedral angle (4 atoms) is measured and displayed. Deselect all atoms with a right-click in empty space. To remove a measurement, re-select all involved atoms and then the last atom twice in a row.

News Index

• 12/24 Season's Greetings

• 12/18 Build 3D Paper Models of Biomolecules

• 12/11 Browse Molecular Evolution at PDB-101

• 12/04 Contact Customer Services with Questions and Feedback

• 11/27 Exploring the Art of Biovisualization

• 11/20 Ebola Virus Proteins

• 11/11 World Antibiotic Awareness Week

• 11/06 Curated 3D Views at PDB-101

• 10/30 Structural Biology Pipeline Meets the High School Classroom

• 10/23 Improved Support for XFEL/SFX Deposition

• 10/16 Access Irving Geis' Early Molecular Images in 3D

• 10/09 Fall Newsletter Published

• 10/04 Create a Nobel-Themed Bean Bag Toss

• 10/03 2018 Nobel Prize in Chemistry

• 10/01 2018 Nobel Prize in Physiology or Medicine

• 09/28 Structural Biology and Nobel Prizes

• 09/25 Explore Distance, Angle, and Dihedral Measurements

• 09/17 Celebrating National Postdoc Appreciation Week

• 09/14 Public Symposium on Superbugs: Evolutionary Insights from the PDB

• 09/10 Meet PDB in VR with Nanome

• 09/04 Head Back to School with PDB-101

• 08/28 Annual Report Published

• 08/21 Poster Prize Awarded at ACA

• 08/14 Molecular Origami: Build 3D models of PDB Structures

• 08/07 Poster Prize Awarded at ISMB

• 07/31 Protein Data Bank Benefits Global Health, Science, Economy

• 07/24 From Structural Biology to Science Policy

• 07/17 Meet the RCSB PDB at ACA

• 07/10 Summer Newsletter Published

• 07/05 Meet the RCSB PDB at ISMB

• 07/02 Facing Rising Temperatures?

• 06/26 wwPDB News: ORCIDs To Become Mandatory for OneDep Contact Authors

• 06/19 Automatically Evaluate Quaternary Structure with EPPIC

• 06/12 Award-Winning Videos on Antibiotic Resistance

• 06/06 Download and Display Electron Density Maps

• 05/31 Vote Now for the Viewer's Choice Award

• 05/27 Molecular Origami: Build a 3D model of Human Papillomavirus (HPV)

• 05/25 wwPDB News: Improvements to Data Replacement Prior to Release; Privacy Policy Update

• 05/22 Guide to Understanding PDB Data

• 05/15 Creating Protein Sculptures

• 05/08 wwPDB News: Conclusion of ORI Misconduct Review Results in Obsoletion of PDB Structures

• 05/01 Advisor Wins 2018 Tyler Prize for Environmental Achievement

• 04/26 Meet RCSB PDB at Rutgers Day (April 28)

• 04/23 Celebrate DNA Day on April 25

• 04/20 Meet RCSB PDB at ASBMB

• 04/19 Helen Berman Elected to American Academy of Arts and Sciences

• 04/17 Protein Structures Sought for CASP13

• 04/10 Spring Newsletter Published

• 04/03 In memoriam: Judith Flippen-Anderson

• 03/27 wwPDB News: Access Updated Validation Reports for PDB Structures

• 03/20 Video: How Enzymes Work

• 03/13 Enter to Win the AMR Calendar

• 03/06 Enter the 2018 Video Challenge

• 02/27 View Interactions and Maps in 3D

• 02/20 wwPDB News: wwPDB Biocuration Highlighted in New Publication

• 02/18 Meet RCSB PDB at Biophysical Society's Annual Meeting

• 02/13 Meet RCSB PDB at AAAS

• 02/06 Making Life Visible: Art, Biology and Visualization

• 01/30 Special Issue Focused on Tools for Protein Science

• 01/23 From the PDB to Phoenix: My Journey as an RCSB PDB Intern

• 01/19 New Architecture and Services Enable Faster Access to More Information

• 01/16 Winter Newsletter Published

• 01/09 wwPDB News: Time-stamped Copies of the PDB Archive Available

• 01/02 A Year of Antimicrobial Resistance