PGV: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE
PGV is a Ligand Of Interest in 5Y5S designated by the RCSB
| Best-fitted instance in this entry | |
| Other instances in this entry |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 5Y5S_PGV_H_303 | 50% | 39% | 0.127 | 0.929 | 1.1 | 1.27 | 2 | 4 | 1 | 0 | 71% | 1 |
| 5Y5S_PGV_D_105 | 48% | 41% | 0.119 | 0.917 | 1.07 | 1.2 | 2 | 5 | 2 | 0 | 69% | 1 |
| 5Y5S_PGV_L_305 | 46% | 41% | 0.144 | 0.906 | 1.04 | 1.26 | 2 | 3 | 5 | 0 | 84% | 1 |
| 5Y5S_PGV_M_414 | 42% | 48% | 0.148 | 0.884 | 1.06 | 0.97 | 2 | 4 | 5 | 0 | 90% | 1 |
| 5Y5S_PGV_M_415 | 36% | 41% | 0.133 | 0.875 | 1.07 | 1.21 | 2 | 3 | 3 | 0 | 73% | 1 |
| 5Y5S_PGV_A_105 | 27% | 40% | 0.168 | 0.877 | 1.18 | 1.18 | 2 | 3 | 5 | 0 | 65% | 1 |
| 5Y5S_PGV_L_306 | 26% | 45% | 0.173 | 0.837 | 0.99 | 1.12 | 2 | 2 | 5 | 0 | 86% | 1 |
| 5Y5S_PGV_1_106 | 24% | 39% | 0.165 | 0.866 | 1.21 | 1.18 | 2 | 3 | 0 | 0 | 61% | 1 |
| 5Y5S_PGV_3_105 | 24% | 52% | 0.202 | 0.833 | 0.94 | 0.92 | 2 | 2 | 3 | 0 | 100% | 1 |
| 5Y5S_PGV_C_509 | 9% | 26% | 0.224 | 0.819 | 1.44 | 1.58 | 3 | 3 | 0 | 0 | 41% | 1 |
| 7C52_PGV_M_411 | 58% | 41% | 0.095 | 0.922 | 1.06 | 1.24 | 2 | 4 | 5 | 0 | 73% | 1 |
| 9IKG_PGV_A_614 | 96% | 53% | 0.073 | 0.982 | 0.74 | 1.06 | 2 | 2 | 0 | 0 | 100% | 1 |
| 5B1B_PGV_C_302 | 94% | 56% | 0.078 | 0.979 | 0.81 | 0.87 | 1 | 1 | 3 | 0 | 100% | 1 |
| 7YPY_PGV_P_302 | 94% | 54% | 0.079 | 0.978 | 0.79 | 0.99 | 2 | 2 | 1 | 0 | 100% | 1 |
| 9IKH_PGV_C_303 | 94% | 53% | 0.08 | 0.979 | 0.77 | 1.06 | - | 3 | 1 | 0 | 100% | 1 |
| 9KUM_PGV_P_304 | 94% | 50% | 0.08 | 0.978 | 0.92 | 1.01 | 4 | 4 | 1 | 0 | 100% | 1 |
