Ligand validation:5NB3

MPD: (4S)-2-METHYL-2,4-PENTANEDIOL

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
5NB3_MPD_N_205	41%	76%	0.154	0.868	0.32	0.61	-	-	0	0	100%	0.5
5NB3_MPD_W_204	31%	71%	0.162	0.83	0.34	0.77	-	-	0	0	100%	0.5
5NB3_MPD_N_204	28%	76%	0.174	0.826	0.24	0.69	-	-	0	0	100%	0.6
5NB3_MPD_P_204	26%	65%	0.16	0.799	0.23	1.09	-	-	0	0	100%	0.6
5NB3_MPD_W_205	23%	82%	0.178	0.799	0.28	0.52	-	-	0	0	100%	0.5
5NB3_MPD_S_204	17%	80%	0.19	0.765	0.18	0.65	-	-	0	0	100%	0.5
5NB3_MPD_Q_204	15%	66%	0.177	0.736	0.44	0.86	-	-	1	0	100%	0.5
5NB3_MPD_X_204	11%	61%	0.205	0.723	0.28	1.18	-	1	1	0	100%	0.5
5NB3_MPD_R_204	11%	73%	0.219	0.733	0.19	0.84	-	-	0	0	100%	0.5
5NB3_MPD_M_204	9%	70%	0.208	0.702	0.26	0.86	-	-	0	0	100%	0.4
5NB3_MPD_O_204	9%	84%	0.262	0.747	0.27	0.49	-	-	0	0	100%	0.5
5NB3_MPD_U_204	6%	82%	0.246	0.671	0.19	0.59	-	-	1	0	100%	0.5
5NB4_MPD_X_204	64%	68%	0.107	0.903	0.36	0.87	-	1	0	0	100%	0.5
9D77_MPD_A_505	100%	87%	0.032	0.998	0.16	0.52	-	-	1	0	100%	1
9H8Q_MPD_B_602	100%	82%	0.039	0.988	0.35	0.44	-	-	3	0	100%	1
9I7H_MPD_B_101	100%	69%	0.041	0.987	0.27	0.92	-	-	3	0	100%	1
9MMI_MPD_B_301	100%	79%	0.04	0.983	0.3	0.56	-	-	4	0	100%	1
2BJK_MPD_A_1520	99%	68%	0.046	0.985	0.64	0.58	-	-	2	0	100%	1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.