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Thioesterase Domain of Human Fatty Acid Synthase (FASN-TE) in apo form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3TJM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.3 uL of 8 mg/ml FAS-TE in 100 mM NaCl, 50 mM BisTris pH 6.0, 10 mM DTT was mixed with 0.2 uL of well solution 10% PEG400, 50 mM Tris-Cl pH 8.5, 1.0 mM DTT, 1.0 mM Ethylenediaminetetraacetic acid disodium salt (EDTA), 300 mM NaCl
Crystal Properties Matthews coefficient Solvent content 1.83 32.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.949 α = 90 b = 61.45 β = 90 c = 76.16 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2016-02-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 1.03316 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 76.2 95.16 0.165 3.6 3.6 7392
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.72 93.7 0.75 1.3 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.6 47.82 7015 378 95.17 0.18977 0.18632 0.1964 0.25314 0.2608 RANDOM 52.229
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.06 0.42 -1.48
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.989 r_long_range_B_other 8.661 r_long_range_B_refined 8.647 r_dihedral_angle_1_deg 6.36 r_scangle_other 5.763 r_dihedral_angle_2_deg 5.061 r_mcangle_it 4.637 r_mcangle_other 4.636 r_scbond_it 3.436 r_scbond_other 3.435
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.989 r_long_range_B_other 8.661 r_long_range_B_refined 8.647 r_dihedral_angle_1_deg 6.36 r_scangle_other 5.763 r_dihedral_angle_2_deg 5.061 r_mcangle_it 4.637 r_mcangle_other 4.636 r_scbond_it 3.436 r_scbond_other 3.435 r_mcbond_it 2.869 r_mcbond_other 2.866 r_angle_refined_deg 1.168 r_angle_other_deg 0.395 r_chiral_restr 0.054 r_bond_refined_d 0.004 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2081 Nucleic Acid Atoms Solvent Atoms 28 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing