8X2R | pdb_00008x2r

The Crystal Structure of HSP 90-alpha from Biortus.

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	6HHR

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		277	(Index-H6) 0.2M Sodium formate, 20% PEG 3350

Crystal Properties
Matthews coefficient	Solvent content
2.74	55.03

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 65.712	α = 90
b = 88.653	β = 90
c = 99.864	γ = 90

Symmetry
Space Group	I 2 2 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER X 9M		2022-08-16	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	CLSI BEAMLINE 08ID-1	0.953698	CLSI	08ID-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.45	36.28	100	0.061	17.3	8.8		51928

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.45	1.47			0.871	2.3

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1.45	34.511	51928	2640	99.91	0.128	0.1264	0.14	0.1561	0.16	25.439

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
2.845			0.462		-3.307

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	34.355
r_dihedral_angle_4_deg	19.472
r_dihedral_angle_3_deg	10.437
r_dihedral_angle_1_deg	6.339
r_lrange_it	5.232
r_lrange_other	4.988
r_scangle_it	4.204
r_scangle_other	4.203
r_scbond_it	3.552
r_scbond_other	3.55
r_mcangle_other	3.528
r_mcangle_it	3.512
r_mcbond_it	2.882
r_mcbond_other	2.784
r_rigid_bond_restr	2.315
r_angle_refined_deg	1.504
r_angle_other_deg	1.466
r_nbd_refined	0.199
r_symmetry_xyhbond_nbd_refined	0.192
r_symmetry_nbd_other	0.176
r_nbtor_refined	0.165
r_nbd_other	0.16
r_symmetry_nbd_refined	0.14
r_xyhbond_nbd_refined	0.139
r_symmetry_nbtor_other	0.08
r_chiral_restr	0.078
r_bond_refined_d	0.01
r_gen_planes_refined	0.008
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1652
Nucleic Acid Atoms
Solvent Atoms	333
Heterogen Atoms	32

Software

Software
Software Name	Purpose
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing