8R0I | pdb_00008r0i

Pseudomonas aeruginosa FabF C164A in complex with 3-amino-N-(1,5-dimethyl-3-oxo-2-phenyl-2,3-dihydro-1H-pyrazol-4-yl)benzamide

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	Other		In-house determined apo structure

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		298	0.24M ammonium formate and 35% PEG3350

Crystal Properties
Matthews coefficient	Solvent content
2.1	41.59

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 101.018	α = 90
b = 103.667	β = 90
c = 141.315	γ = 90

Symmetry
Space Group	C 2 2 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER2 X 9M		2023-09-15	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ESRF BEAMLINE ID30B	0.8731	ESRF	ID30B

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.51	72.35	100	0.998	10.8	6.8		115834

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.51	1.54	98.5		0.293		5.9

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1.51	72.349	115789	5757	99.895	0.194	0.1916	0.2	0.236	0.19	30.804

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-1.471			0.62		0.851

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	17.242
r_dihedral_angle_3_deg	15.65
r_dihedral_angle_2_deg	14.619
r_lrange_other	7.208
r_lrange_it	7.206
r_dihedral_angle_1_deg	6.813
r_scangle_it	6.57
r_scangle_other	6.569
r_scbond_it	4.764
r_scbond_other	4.763
r_mcangle_it	4.476
r_mcangle_other	4.476
r_mcbond_other	3.724
r_mcbond_it	3.723
r_angle_refined_deg	1.868
r_angle_other_deg	0.734
r_nbd_refined	0.208
r_nbtor_refined	0.174
r_symmetry_nbd_other	0.17
r_xyhbond_nbd_refined	0.14
r_nbd_other	0.127
r_symmetry_nbd_refined	0.108
r_chiral_restr	0.105
r_symmetry_xyhbond_nbd_refined	0.093
r_symmetry_xyhbond_nbd_other	0.084
r_symmetry_nbtor_other	0.077
r_ncsr_local_group_1	0.066
r_dihedral_angle_other_2_deg	0.024
r_bond_refined_d	0.013
r_gen_planes_refined	0.012
r_bond_other_d	0.003
r_gen_planes_other	0.003

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	6060
Nucleic Acid Atoms
Solvent Atoms	280
Heterogen Atoms	74

Software

Software
Software Name	Purpose
REFMAC	refinement
xia2	data reduction
DIALS	data scaling
PHASER	phasing