8C1P | pdb_00008c1p

Active state homomeric GluA1 AMPA receptor in complex with TARP gamma 3


ELECTRON MICROSCOPY

Refinement

RMS Deviations
KeyRefinement Restraint Deviation
r_long_range_B_refined26.583
r_long_range_B_other26.583
r_dihedral_angle_3_deg17.212
r_scangle_other16.716
r_mcangle_it15.09
r_mcangle_other15.089
r_scbond_it10.128
r_scbond_other10.128
r_mcbond_it9.39
r_mcbond_other9.39
RMS Deviations
KeyRefinement Restraint Deviation
r_long_range_B_refined26.583
r_long_range_B_other26.583
r_dihedral_angle_3_deg17.212
r_scangle_other16.716
r_mcangle_it15.09
r_mcangle_other15.089
r_scbond_it10.128
r_scbond_other10.128
r_mcbond_it9.39
r_mcbond_other9.39
r_dihedral_angle_1_deg5.658
r_dihedral_angle_2_deg4.557
r_angle_refined_deg1.414
r_angle_other_deg0.624
r_chiral_restr0.087
r_gen_planes_refined0.007
r_bond_refined_d0.006
r_gen_planes_other0.003
r_bond_other_d
r_dihedral_angle_4_deg
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Sample
Homomeric GluA1 AMPA receptor in complex with TARP gamma 3
Specimen Preparation
Sample Aggregation StatePARTICLE
Vitrification Instrument
Cryogen NameETHANE
Sample Vitrification Details
3D Reconstruction
Reconstruction MethodSINGLE PARTICLE
Number of Particles247485
Reported Resolution (Å)2.9
Resolution MethodFSC 0.143 CUT-OFF
Other Details
Refinement Type
Symmetry TypePOINT
Point SymmetryC1
Map-Model Fitting and Refinement
Id1
Refinement SpaceRECIPROCAL
Refinement Protocol
Refinement Target
Overall B Value
Fitting Procedure
DetailsServalcat
Data Acquisition
Detector TypeGATAN K3 BIOQUANTUM (6k x 4k)
Electron Dose (electrons/Å**2)50
Imaging Experiment1
Date of Experiment
Temperature (Kelvin)
Microscope ModelTFS KRIOS
Minimum Defocus (nm)1400
Maximum Defocus (nm)2400
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS
Imaging ModeBRIGHT FIELD
Specimen Holder Model
Nominal Magnification
Calibrated Magnification
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
EM Software
TaskSoftware PackageVersion
MODEL REFINEMENTREFMAC
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION