7OBO | pdb_00007obo

GSTF1 from Alopecurus myosuroides

X-RAY DIFFRACTION

---

Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	6TJS

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION		293	Morpheus screen followed by screening

Crystal Properties
Matthews coefficient	Solvent content
3.24	62.04

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 112.896	α = 90
b = 112.896	β = 90
c = 101.669	γ = 90

Symmetry
Space Group	I 41 2 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M		2018-07-30	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I04-1	0.91587	Diamond	I04-1

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.3	35.7	100	0.069	26	26		394340

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.3	2.38			0.971

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	6TJS	2.3	35.7	14895	715	99.839	0.195	0.1931	0.2	0.24	0.24	67.932

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.761			-0.761		1.521

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	31.47
r_dihedral_angle_4_deg	20.69
r_dihedral_angle_3_deg	18.933
r_dihedral_angle_1_deg	7.496
r_lrange_it	7.149
r_lrange_other	7.128
r_scangle_other	4.804
r_scangle_it	4.802
r_mcangle_it	3.576
r_mcangle_other	3.576
r_scbond_it	3.256
r_scbond_other	3.254
r_mcbond_it	2.506
r_mcbond_other	2.5
r_angle_refined_deg	1.97
r_angle_other_deg	1.422
r_nbd_refined	0.214
r_symmetry_nbd_refined	0.207
r_symmetry_nbd_other	0.19
r_nbtor_refined	0.182
r_nbd_other	0.169
r_xyhbond_nbd_refined	0.168
r_chiral_restr	0.099
r_symmetry_nbtor_other	0.087
r_symmetry_xyhbond_nbd_refined	0.028
r_bond_refined_d	0.014
r_gen_planes_refined	0.012
r_gen_planes_other	0.002
r_bond_other_d	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1712
Nucleic Acid Atoms
Solvent Atoms	51
Heterogen Atoms	32

Software

Software
Software Name	Purpose
REFMAC	refinement
xia2	data reduction
xia2	data scaling
PHASER	phasing