7AWF | pdb_00007awf

The Fk1 domain of FKBP51 in complex with (2R,5S,12R)-12-cyclohexyl-2-[2-(3,4-dimethoxyphenyl)ethyl]-15,15,16-trimethyl-3,19-dioxa-10,13,16-triazatricyclo[18.3.1.0^5,^10]tetracosa-1(24),20,22-triene-4,11,14,17-tetrone

X-RAY DIFFRACTION

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Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	7AOU

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP	7.5	293	28% PEG3350 0.1M HEPES pH 7.5 0.2M ammonium thiocyanate NH4 SCN

Crystal Properties
Matthews coefficient	Solvent content
2.23	44.77

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 42.46	α = 90
b = 50.066	β = 90
c = 58.781	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER X 16M		2020-10-24	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SLS BEAMLINE X06SA	1.0	SLS	X06SA

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.4	38.11	98.2	0.122	0.16	0.101	0.988	4.8	4.2		24784

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.4	1.42			1.332	1.728	1.09	0.494		4

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	7AOU	1.4	38.003	24745	1242	97.729	0.197	0.1941	0.2	0.2434	0.25	RANDOM	21.766

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
1.579			-0.419		-1.16

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	28.508
r_dihedral_angle_4_deg	18.134
r_dihedral_angle_3_deg	12.716
r_dihedral_angle_1_deg	8.872
r_lrange_it	5.391
r_lrange_other	5.249
r_scangle_it	4.873
r_scangle_other	4.87
r_mcangle_it	4.385
r_mcangle_other	4.383
r_scbond_it	4.021
r_scbond_other	4.017
r_mcbond_it	3.745
r_mcbond_other	3.743
r_rigid_bond_restr	3.256
r_angle_refined_deg	1.946
r_angle_other_deg	1.683
r_chiral_restr_other	1.121
r_nbd_refined	0.204
r_symmetry_nbd_other	0.183
r_nbd_other	0.173
r_nbtor_refined	0.172
r_symmetry_xyhbond_nbd_refined	0.163
r_xyhbond_nbd_refined	0.131
r_symmetry_nbd_refined	0.103
r_chiral_restr	0.099
r_symmetry_nbtor_other	0.086
r_bond_refined_d	0.017
r_gen_planes_refined	0.015
r_bond_other_d	0.004
r_gen_planes_other	0.002

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	936
Nucleic Acid Atoms
Solvent Atoms	111
Heterogen Atoms	49

Software

Software
Software Name	Purpose
REFMAC	refinement
REFMAC	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing