Experiment: 3EYP

X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION	7	294	1.8M ammonium tri-citrate pH 7.0, Vapor diffusion, temperature 294K

Crystal Properties
Matthews coefficient	Solvent content
2.8	56.03

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 120.709	α = 90
b = 125.193	β = 90
c = 158.207	γ = 90

Symmetry
Space Group	I 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	MAR CCD 165 mm		2008-10-15	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	APS BEAMLINE 31-ID	0.97958	APS	31-ID

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	R Sym I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.9	98.173	100	0.11	0.11	10	10.2	94178	94178			32.8

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	R-Sym I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.9	2	100		0.639	0.639	2.1	10.1	13620

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (All)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	SAD	THROUGHOUT	1.9	20	94100	94091	4717	99.99	0.211	0.208	0.22	0.252	0.26	RANDOM	46.17

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-1.83			-0.6		2.43

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	32.594
r_dihedral_angle_4_deg	18.982
r_dihedral_angle_3_deg	15.212
r_dihedral_angle_1_deg	6.222
r_scangle_it	3.878
r_scbond_it	2.579
r_angle_other_deg	1.826
r_angle_refined_deg	1.613
r_mcangle_it	1.491
r_mcbond_it	0.901

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	32.594
r_dihedral_angle_4_deg	18.982
r_dihedral_angle_3_deg	15.212
r_dihedral_angle_1_deg	6.222
r_scangle_it	3.878
r_scbond_it	2.579
r_angle_other_deg	1.826
r_angle_refined_deg	1.613
r_mcangle_it	1.491
r_mcbond_it	0.901
r_mcbond_other	0.279
r_chiral_restr	0.105
r_bond_refined_d	0.019
r_gen_planes_refined	0.009
r_gen_planes_other	0.002
r_bond_other_d	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	7302
Nucleic Acid Atoms
Solvent Atoms	638
Heterogen Atoms	48

Software

Software
Software Name	Purpose
SCALA	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
MAR345	data collection
MOSFLM	data reduction
SHELXCD	phasing
SHELXE	model building

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.