2C6P | pdb_00002c6p

Membrane-bound glutamate carboxypeptidase II (GCPII) in complex with phosphate anion

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1		7.25		20 MM HEPES PH 7.25, 200 MM NACL, 5% (W/V) PEG 400 AND 15% (W/V) PEG 1500

Crystal Properties
Matthews coefficient	Solvent content
3.54	64.98

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 102.573	α = 90
b = 130.365	β = 90
c = 159.414	γ = 90

Symmetry
Space Group	I 2 2 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	261	CCD	MARRESEARCH		2003-12-01	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	EMBL/DESY, HAMBURG BEAMLINE X13		EMBL/DESY, HAMBURG	X13

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.4	47.14					42414		-3

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	OTHER	THROUGHOUT	2.39	47.14	40228	1067	97.3	0.2	0.198	0.2032	0.251	0.2488	RANDOM	44.43

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.98			-2.73		1.74

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_1_deg	7.447
r_scangle_it	3.659
r_scbond_it	2.122
r_angle_refined_deg	1.714
r_mcangle_it	1.652
r_angle_other_deg	0.944
r_mcbond_it	0.883
r_symmetry_hbond_refined	0.341
r_symmetry_vdw_other	0.246
r_nbd_other	0.242
r_nbd_refined	0.227
r_symmetry_vdw_refined	0.165
r_xyhbond_nbd_refined	0.152
r_chiral_restr	0.102
r_nbtor_other	0.091
r_bond_refined_d	0.016
r_gen_planes_refined	0.007
r_gen_planes_other	0.004
r_bond_other_d	0.002
r_dihedral_angle_2_deg
r_dihedral_angle_3_deg
r_dihedral_angle_4_deg
r_nbtor_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	5155
Nucleic Acid Atoms
Solvent Atoms	87
Heterogen Atoms	132

Software

Software
Software Name	Purpose
REFMAC	refinement
DENZO	data reduction
SCALEPACK	data scaling