1VJ1 | pdb_00001vj1

Crystal structure of putative NADPH-dependent oxidoreductase from Mus musculus at 2.10 A resolution

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1		5.1	277	0.1M Citrate pH 5.1, 0.2M NH4OAc, 15% PEG-4000 , VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K, pH 5.10

Crystal Properties
Matthews coefficient	Solvent content
2.6	51.75

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 42.386	α = 90
b = 91.805	β = 90
c = 100.565	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	ADSC		2003-05-09	M	MAD

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ALS BEAMLINE 8.2.2	0.97950, 0.9793, 0.9567	ALS	8.2.2

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Sym I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.1	100.56	95.3	0.069	10.9	3.2		22460			41.59

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R-Sym I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.1	2.15	74.9		0.431	1.7	2.1

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MAD	THROUGHOUT	2.1	50.28	21310	1123	94.9	0.182	0.18	0.19	0.216	0.23	RANDOM	19.61

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.37			-0.72		0.35

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	42.504
r_dihedral_angle_4_deg	21.759
r_dihedral_angle_3_deg	14.852
r_scangle_it	7.828
r_dihedral_angle_1_deg	6.66
r_scbond_it	6.205
r_mcangle_it	3.254
r_mcbond_it	2.368
r_angle_refined_deg	1.473
r_angle_other_deg	0.824
r_mcbond_other	0.533
r_symmetry_vdw_other	0.297
r_symmetry_hbond_refined	0.267
r_nbd_refined	0.201
r_nbd_other	0.185
r_symmetry_vdw_refined	0.149
r_xyhbond_nbd_refined	0.128
r_nbtor_other	0.089
r_chiral_restr	0.085
r_bond_refined_d	0.016
r_gen_planes_refined	0.005
r_bond_other_d	0.001
r_gen_planes_other	0.001
r_nbtor_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2555
Nucleic Acid Atoms
Solvent Atoms	153
Heterogen Atoms

Software

Software
Software Name	Purpose
MOSFLM	data reduction
SCALA	data scaling
SOLVE	phasing
RESOLVE	model building
REFMAC	refinement
CCP4	data scaling
RESOLVE	phasing