1OAR | pdb_00001oar

Fv IgE SPE-7 in complex with Alizarin Red

X-RAY DIFFRACTION

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Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1		5		21% PEG 8K, 0.1M NA CACODYLATE, 0.2M NA ACETATE PH5.5, pH 5.00

Crystal Properties
Matthews coefficient	Solvent content
1.5	70

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 78.917	α = 90
b = 78.882	β = 90
c = 169.036	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	IMAGE PLATE	MARRESEARCH	MIRRORS	2000-11-15	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	ROTATING ANODE	RIGAKU RU200

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.25	35.8	99.6	0.067		13.7		26942		2

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	PDB ENTRY 1ANQ	2.23	33.71	49572	2666	100	0.205	0.235	0.241	0.2308	RANDOM	52.44

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
0.35			0.23		-0.58

RMS Deviations
Key	Refinement Restraint Deviation
r_chiral_restr	7.464
r_scangle_it	7.136
r_scbond_it	5.024
r_angle_other_deg	3.995
r_mcangle_it	3.535
r_mcbond_it	2.172
r_dihedral_angle_3_deg	2.142
r_nbd_refined	0.632
r_symmetry_vdw_other	0.379
r_nbd_other	0.37
r_symmetry_hbond_refined	0.308
r_xyhbond_nbd_refined	0.243
r_symmetry_vdw_refined	0.23
r_bond_refined_d	0.207
r_nbtor_other	0.12
r_bond_other_d	0.092
r_gen_planes_refined	0.022
r_gen_planes_other	0.016
r_angle_refined_deg
r_dihedral_angle_1_deg
r_dihedral_angle_2_deg
r_dihedral_angle_4_deg
r_nbtor_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	6482
Nucleic Acid Atoms
Solvent Atoms	352
Heterogen Atoms	216

Software

Software
Software Name	Purpose
REFMAC	refinement
MOSFLM	data reduction
SCALA	data scaling
AMoRE	phasing