9HAQ | pdb_00009haq

Crystal structure of methionine gamma-lyase from Brevibacterium sandarakinum in complex with PLP and norleucine at pH 8.5

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C, E, G, K, M C, E, G, K, M, N, O	Cystathionine gamma-synthase	carbon-sulfur lyase activity lyase activity catalytic activity cystathionine gamma-lyase activity vitamin binding vitamin B6 binding pyridoxal phosphate binding ion binding binding anion binding heterocyclic compound binding small molecule binding	homocysteine metabolic process oxoacid metabolic process sulfur amino acid metabolic process carboxylic acid metabolic process amino acid metabolic process primary metabolic process organic acid metabolic process transsulfuration alpha-amino acid metabolic process cysteine metabolic process non-proteinogenic amino acid metabolic process metabolic process cellular process small molecule metabolic process homocysteine metabolic process oxoacid metabolic process sulfur amino acid metabolic process carboxylic acid metabolic process amino acid metabolic process primary metabolic process organic acid metabolic process transsulfuration alpha-amino acid metabolic process cysteine metabolic process non-proteinogenic amino acid metabolic process metabolic process cellular process small molecule metabolic process sulfur compound metabolic process homoserine metabolic process cysteine biosynthetic process via cystathionine organic acid biosynthetic process carboxylic acid biosynthetic process cysteine biosynthetic process small molecule biosynthetic process amino acid biosynthetic process sulfur compound biosynthetic process biosynthetic process serine family amino acid biosynthetic process sulfur amino acid biosynthetic process alpha-amino acid biosynthetic process	cellular anatomical structure intracellular anatomical structure cytoplasm
A, B, D, F, H A, B, D, F, H, I, J, L, P	Cystathionine gamma-synthase	carbon-sulfur lyase activity lyase activity catalytic activity cystathionine gamma-lyase activity vitamin binding vitamin B6 binding pyridoxal phosphate binding ion binding binding anion binding heterocyclic compound binding small molecule binding	homocysteine metabolic process oxoacid metabolic process sulfur amino acid metabolic process carboxylic acid metabolic process amino acid metabolic process primary metabolic process organic acid metabolic process transsulfuration alpha-amino acid metabolic process cysteine metabolic process non-proteinogenic amino acid metabolic process metabolic process cellular process small molecule metabolic process homocysteine metabolic process oxoacid metabolic process sulfur amino acid metabolic process carboxylic acid metabolic process amino acid metabolic process primary metabolic process organic acid metabolic process transsulfuration alpha-amino acid metabolic process cysteine metabolic process non-proteinogenic amino acid metabolic process metabolic process cellular process small molecule metabolic process sulfur compound metabolic process homoserine metabolic process cysteine biosynthetic process via cystathionine organic acid biosynthetic process carboxylic acid biosynthetic process cysteine biosynthetic process small molecule biosynthetic process amino acid biosynthetic process sulfur compound biosynthetic process biosynthetic process serine family amino acid biosynthetic process sulfur amino acid biosynthetic process alpha-amino acid biosynthetic process	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C, E, G, K, M C, E, G, K, M, N, O	IPR015424	Pyridoxal phosphate-dependent transferase	Homologous Superfamily
C, E, G, K, M C, E, G, K, M, N, O	IPR000277	Cys/Met metabolism, pyridoxal phosphate-dependent enzyme	Family
C, E, G, K, M C, E, G, K, M, N, O	IPR015421	Pyridoxal phosphate-dependent transferase, major domain	Homologous Superfamily
C, E, G, K, M C, E, G, K, M, N, O	IPR015422	Pyridoxal phosphate-dependent transferase, small domain	Homologous Superfamily
A, B, D, F, H A, B, D, F, H, I, J, L, P	IPR015424	Pyridoxal phosphate-dependent transferase	Homologous Superfamily
A, B, D, F, H A, B, D, F, H, I, J, L, P	IPR000277	Cys/Met metabolism, pyridoxal phosphate-dependent enzyme	Family
A, B, D, F, H A, B, D, F, H, I, J, L, P	IPR015421	Pyridoxal phosphate-dependent transferase, major domain	Homologous Superfamily
A, B, D, F, H A, B, D, F, H, I, J, L, P	IPR015422	Pyridoxal phosphate-dependent transferase, small domain	Homologous Superfamily

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A, B, D, F, H A, B, D, F, H, I, J, L, P	LLP	Parent Component: LYS RESID: AA0119 PSI-MOD : N6-pyridoxal phosphate-L-lysine MOD:00128

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.