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 9XK3 | pdb_00009xk3

In situ C2S2M2L4-type PSII-LHCII supercomplex, core, protomer 1


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
M [auth 1O]PF01716Manganese-stabilising protein / photosystem II polypeptide (MSP)Manganese-stabilising protein / photosystem II polypeptide- Family
R [auth 1W]PF07123Photosystem II reaction centre W protein (PsbW) (PsbW)Photosystem II reaction centre W protein (PsbW)- Family
T [auth 1Y]PF06298Photosystem II protein Y (PsbY) (PsbY)Photosystem II protein Y (PsbY)- Family
Q [auth 1V]PF04725Photosystem II 10 kDa polypeptide PsbR (PsbR)Photosystem II 10 kDa polypeptide PsbR- Family
N [auth 1P]PF01789PsbP (PsbP)PsbPThis entry consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria (known as CyanoP). The 23 KDa PsbP protein is required for PSII to be ful ...This entry consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria (known as CyanoP). The 23 KDa PsbP protein is required for PSII to be fully operational in vivo, it increases the affinity of the water oxidation site for Cl- and provides the conditions required for high affinity binding of Ca2+ [2]. Structure of CyanoP from Synechocystis sp. revealed that it has an alpha-beta-alpha fold containing 10 beta strands organized into two anti-parallel beta-sheets, packed against alpha-helices. This entry covers the first seven beta-stands (beta1-beta7) and the N-terminal alpha-helix [1].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
B [auth 1B]Photosystem II CP47 reaction center protein
C [auth 1C]Photosystem II CP43 reaction center protein
D [auth 1D]Photosystem II D2 protein
E [auth 1E]Cytochrome b559 subunit alpha
F [auth 1F]Cytochrome b559 subunit beta
G [auth 1H]Photosystem II reaction center protein H
H [auth 1I]Photosystem II reaction center protein I-
I [auth 1J]Photosystem II reaction center protein J-
J [auth 1K]Photosystem II reaction center protein K-
K [auth 1L]Photosystem II reaction center protein L-
L [auth 1M]Photosystem II reaction center protein M-
M [auth 1O]33 kDa subunit of oxygen evolving system of photosystem II
O [auth 1T]Photosystem II reaction center protein T-
P [auth 1U]Os02g0581100 protein- - -
R [auth 1W]Photosystem II reaction center W protein, chloroplastic-
T [auth 1Y]Os08g0119800 protein
U [auth 1Z]Photosystem II reaction center protein Z-
S [auth 1X]Os07g0673550 protein-
Q [auth 1V]Photosystem II 10 kDa polypeptide, chloroplastic-
N [auth 1P]23 kDa subunit of oxygen evolving system of photosystem II
A [auth 1A]Photosystem II protein D1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
B [auth 1B]IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
B [auth 1B]IPR000932Photosystem antenna protein-likeFamily
B [auth 1B]IPR017486Photosystem II CP47 reaction centre proteinFamily
C [auth 1C]IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
C [auth 1C]IPR000932Photosystem antenna protein-likeFamily
C [auth 1C]IPR005869Photosystem II CP43 reaction centre proteinFamily
C [auth 1C]IPR044900Photosystem II CP43 reaction centre protein superfamilyHomologous Superfamily
D [auth 1D]IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
D [auth 1D]IPR005868Photosystem II D2Family
D [auth 1D]IPR000484Photosynthetic reaction centre, L/MFamily
D [auth 1D]IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
D [auth 1D]IPR055266Photosystem II protein D1/D2Family
E [auth 1E]IPR013081Photosystem II cytochrome b559, N-terminalDomain
E [auth 1E]IPR006217Photosystem II cytochrome b559, alpha subunitFamily
E [auth 1E]IPR013082Photosystem II cytochrome b559, alpha subunit, lumenal regionDomain
E [auth 1E]IPR037025Photosystem II cytochrome b559, alpha subunit superfamilyHomologous Superfamily
E [auth 1E]IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
F [auth 1F]IPR006241Photosystem II cytochrome b559, beta subunitFamily
F [auth 1F]IPR013081Photosystem II cytochrome b559, N-terminalDomain
F [auth 1F]IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
G [auth 1H]IPR036863Photosystem II reaction centre protein H superfamilyHomologous Superfamily
G [auth 1H]IPR001056Photosystem II reaction centre protein HFamily
H [auth 1I]IPR037271Photosystem II PsbI superfamilyHomologous Superfamily
H [auth 1I]IPR003686Photosystem II PsbIFamily
I [auth 1J]IPR002682Photosystem II PsbJFamily
I [auth 1J]IPR037267Photosystem II PsbJ superfamilyHomologous Superfamily
J [auth 1K]IPR037270Photosystem II PsbK superfamilyHomologous Superfamily
J [auth 1K]IPR003687Photosystem II PsbKFamily
K [auth 1L]IPR003372Photosystem II PsbLFamily
K [auth 1L]IPR037266Photosystem II PsbL superfamilyHomologous Superfamily
L [auth 1M]IPR007826Photosystem II PsbMFamily
L [auth 1M]IPR037269Photosystem II PsbM superfamilyHomologous Superfamily
M [auth 1O]IPR011250Outer membrane protein/outer membrane enzyme PagP-like, beta-barrel superfamilyHomologous Superfamily
M [auth 1O]IPR002628Photosystem II extrinsic protein OFamily
O [auth 1T]IPR001743Photosystem II PsbTFamily
O [auth 1T]IPR037268Photosystem II PsbT superfamilyHomologous Superfamily
P [auth 1U]IPR040296Photosystem II 5kDa protein, chloroplasticFamily
R [auth 1W]IPR009806Photosystem II PsbW, class 2Family
T [auth 1Y]IPR038760Photosystem II PsbY, plantFamily
T [auth 1Y]IPR009388Photosystem II PsbYFamily
U [auth 1Z]IPR036512Photosystem II PsbZ superfamilyHomologous Superfamily
U [auth 1Z]IPR002644Photosystem II PsbZ, reaction centreFamily
S [auth 1X]IPR009518Photosystem II PsbXFamily
Q [auth 1V]IPR006814Photosystem II PsbRFamily
N [auth 1P]IPR006311Twin-arginine translocation pathway, signal sequenceConserved Site
N [auth 1P]IPR002683PsbP, C-terminalDomain
N [auth 1P]IPR016123Mog1/PsbP, alpha/beta/alpha sandwichHomologous Superfamily
A [auth 1A]IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
A [auth 1A]IPR005867Photosystem II protein D1Family
A [auth 1A]IPR000484Photosynthetic reaction centre, L/MFamily
A [auth 1A]IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
A [auth 1A]IPR055266Photosystem II protein D1/D2Family