9WGU | pdb_00009wgu

Crystal structure of Cbl-b bound to compound

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth AAA], B [auth BBB]	PF02262	CBL proto-oncogene N-terminal domain 1 (Cbl_N)	CBL proto-oncogene N-terminal domain 1	Cbl is an adaptor protein that binds EGF receptors (or other tyrosine kinases) and SH3 domains, functioning as a negative regulator of many signaling pathways. The N-terminal domain is evolutionarily conserved, and is known to bind to phosphorylated ...	Cbl is an adaptor protein that binds EGF receptors (or other tyrosine kinases) and SH3 domains, functioning as a negative regulator of many signaling pathways. The N-terminal domain is evolutionarily conserved, and is known to bind to phosphorylated tyrosine residues. Cbl_N is comprised of 3 structural domains of which this is the first - a four helix bundle.	Domain
A [auth AAA], B [auth BBB]	PF00097	Zinc finger, C3HC4 type (RING finger) (zf-C3HC4)	Zinc finger, C3HC4 type (RING finger)	The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid [1]. Many protein ...	The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid [1]. Many proteins containing a RING finger play a key role in the ubiquitination pathway [2].	Domain
A [auth AAA], B [auth BBB]	PF02762	CBL proto-oncogene N-terminus, SH2-like domain (Cbl_N3)	CBL proto-oncogene N-terminus, SH2-like domain	Cbl is an adaptor protein that binds EGF receptors (or other tyrosine kinases) and SH3 domains, functioning as a negative regulator of many signaling pathways. The N-terminal domain is evolutionarily conserved, and is known to bind to phosphorylated ...	Cbl is an adaptor protein that binds EGF receptors (or other tyrosine kinases) and SH3 domains, functioning as a negative regulator of many signaling pathways. The N-terminal domain is evolutionarily conserved, and is known to bind to phosphorylated tyrosine residues. The so called N-terminal domain is actually 3 structural domains, of which this is the C-terminal SH2 domain.	Domain
A [auth AAA], B [auth BBB]	PF02761	CBL proto-oncogene N-terminus, EF hand-like domain (Cbl_N2)	CBL proto-oncogene N-terminus, EF hand-like domain	Cbl is an adaptor protein that binds EGF receptors (or other tyrosine kinases) and SH3 domains, functioning as a negative regulator of many signaling pathways. The N-terminal domain is evolutionarily conserved, and is known to bind to phosphorylated ...	Cbl is an adaptor protein that binds EGF receptors (or other tyrosine kinases) and SH3 domains, functioning as a negative regulator of many signaling pathways. The N-terminal domain is evolutionarily conserved, and is known to bind to phosphorylated tyrosine residues. The so called N-terminal domain is actually 3 structural domains, of which this is the central EF hand domain.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth AAA], B [auth BBB]	E3 ubiquitin-protein ligase CBL-B	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding phosphoprotein binding phosphotyrosine residue binding protein binding protein phosphorylated amino acid binding aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity cation binding ion binding binding calcium ion binding metal ion binding small molecule binding phosphoprotein binding phosphotyrosine residue binding protein binding protein phosphorylated amino acid binding aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity ubiquitin-like protein ligase activity ubiquitin protein ligase activity transferase activity catalytic activity ubiquitin-protein transferase activity protein tyrosine kinase binding kinase binding signaling receptor binding receptor tyrosine kinase binding enzyme binding protein kinase binding transition metal ion binding zinc ion binding	regulation of protein stability biological regulation regulation of biological quality protein stabilization regulation protein catabolic process at synapse regulation of biological process catabolic process regulation of cellular process metabolic process cellular process regulation of catabolic process regulation of metabolic process regulation protein catabolic process at postsynapse cellular response to stimulus regulation of protein stability biological regulation regulation of biological quality protein stabilization regulation protein catabolic process at synapse regulation of biological process catabolic process regulation of cellular process metabolic process cellular process regulation of catabolic process regulation of metabolic process regulation protein catabolic process at postsynapse cellular response to stimulus response to stimulus signaling negative regulation of signaling negative regulation of ERBB signaling pathway negative regulation of biological process regulation of signal transduction cell surface receptor protein tyrosine kinase signaling pathway negative regulation of cell communication cell communication regulation of epidermal growth factor receptor signaling pathway negative regulation of cellular process epidermal growth factor receptor signaling pathway signal transduction enzyme-linked receptor protein signaling pathway regulation of signaling regulation of ERBB signaling pathway cell surface receptor signaling pathway negative regulation of response to stimulus negative regulation of signal transduction regulation of response to stimulus negative regulation of epidermal growth factor receptor signaling pathway ERBB signaling pathway regulation of cell communication establishment of protein localization cellular localization NLS-bearing protein import into nucleus nucleocytoplasmic transport transport nuclear transport intracellular transport protein localization to nucleus establishment of localization localization import into nucleus establishment of protein localization to organelle protein transport establishment of localization in cell macromolecule localization protein localization to organelle protein import into nucleus intracellular protein localization intracellular protein transport immune response-regulating cell surface receptor signaling pathway positive regulation of biological process regulation of antigen receptor-mediated signaling pathway negative regulation of antigen receptor-mediated signaling pathway positive regulation of response to stimulus immune response-activating signaling pathway immune response-regulating signaling pathway positive regulation of immune response regulation of immune system process positive regulation of immune system process immune response-activating cell surface receptor signaling pathway immune response regulation of T cell receptor signaling pathway T cell receptor signaling pathway negative regulation of T cell receptor signaling pathway negative regulation of immune system process immune system process regulation of immune response antigen receptor-mediated signaling pathway activation of immune response protein polyubiquitination primary metabolic process protein K63-linked ubiquitination protein ubiquitination macromolecule modification protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal platelet-derived growth factor receptor-alpha signaling pathway platelet-derived growth factor receptor signaling pathway regulation of platelet-derived growth factor receptor signaling pathway regulation of platelet-derived growth factor receptor-alpha signaling pathway multicellular organismal process regulation of leukocyte activation regulation of cell activation lymphocyte activation negative regulation of lymphocyte activation leukocyte cell-cell adhesion negative regulation of cell adhesion leukocyte activation cell adhesion cell-cell adhesion T cell activation regulation of multicellular organismal process regulation of cell-cell adhesion regulation of cell adhesion cell activation regulation of T cell activation negative regulation of cell activation negative regulation of T cell activation negative regulation of leukocyte cell-cell adhesion negative regulation of cell-cell adhesion regulation of leukocyte cell-cell adhesion negative regulation of multicellular organismal process negative regulation of leukocyte activation regulation of lymphocyte activation import into cell regulation of localization regulation of cellular component organization receptor internalization postsynaptic neurotransmitter receptor internalization regulation of receptor internalization vesicle-mediated transport vesicle-mediated transport in synapse cellular component organization regulation of postsynaptic neurotransmitter receptor internalization cellular component organization or biogenesis regulation of endocytosis regulation of transport regulation of receptor-mediated endocytosis regulation of vesicle-mediated transport neurotransmitter receptor internalization regulation of postsynaptic membrane neurotransmitter receptor levels postsynaptic endocytosis endocytosis receptor-mediated endocytosis	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane membrane microdomain membrane raft synapse cell junction glutamatergic synapse postsynapse

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth AAA], B [auth BBB]	IPR036860	SH2 domain superfamily	Homologous Superfamily
A [auth AAA], B [auth BBB]	IPR024159	Adaptor protein Cbl, PTB domain	Domain
A [auth AAA], B [auth BBB]	IPR039520	E3 ubiquitin-protein ligase CBL-B, RING finger, HC subclass	Domain
A [auth AAA], B [auth BBB]	IPR003153	Adaptor protein Cbl, N-terminal helical	Domain
A [auth AAA], B [auth BBB]	IPR011992	EF-hand domain pair	Homologous Superfamily
A [auth AAA], B [auth BBB]	IPR015940	Ubiquitin-associated domain	Domain
A [auth AAA], B [auth BBB]	IPR018957	Zinc finger, C3HC4 RING-type	Domain
A [auth AAA], B [auth BBB]	IPR017907	Zinc finger, RING-type, conserved site	Conserved Site
A [auth AAA], B [auth BBB]	IPR024162	Adaptor protein Cbl	Family
A [auth AAA], B [auth BBB]	IPR014741	Adaptor protein Cbl, EF hand-like	Domain
A [auth AAA], B [auth BBB]	IPR013083	Zinc finger, RING/FYVE/PHD-type	Homologous Superfamily
A [auth AAA], B [auth BBB]	IPR014742	Adaptor protein Cbl, SH2-like domain	Domain
A [auth AAA], B [auth BBB]	IPR036537	Adaptor protein Cbl, N-terminal domain superfamily	Homologous Superfamily
A [auth AAA], B [auth BBB]	IPR001841	Zinc finger, RING-type	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth AAA], B [auth BBB]	: Q13191	experimental autoimmune encephalomyelitis multiple sclerosis pancreatic intraductal papillary-mucinous carcinoma Pick disease acute myeloid leukemia Barrett esophagus dermatomyositis glioblastoma malignant pancreatic neoplasm Multiple Sclerosis, Acute Fulminating ovarian cancer pancreatic intraductal papillary-mucinous neoplasm primitive neuroectodermal tumor adrenoleukodystrophy congenital anemia experimental autoimmune encephalomyelitis multiple sclerosis pancreatic intraductal papillary-mucinous carcinoma Pick disease acute myeloid leukemia Barrett esophagus dermatomyositis glioblastoma malignant pancreatic neoplasm Multiple Sclerosis, Acute Fulminating ovarian cancer pancreatic intraductal papillary-mucinous neoplasm primitive neuroectodermal tumor adrenoleukodystrophy congenital anemia esophageal adenocarcinoma juvenile dermatomyositis medulloblastoma myopathy pancreatic ductal adenocarcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia subependymal giant cell astrocytoma astrocytic tumor lung cancer oligodendroglioma

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.