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 9R2U | pdb_00009r2u

Drosophila MSL HAT nucleosome complex H4K16ac post-catalytic state


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
FSCOP2B SuperfamilyCore histone-like 8070545 3001387 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyCore histone-like 8066267 3001387 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyCore histone-like 8066267 3001387 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyCore histone-like 8067138 3001387 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyCore histone-like 8067138 3001387 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyCore histone-like 8070545 3001387 SCOP2B (2022-06-29)
M [auth O]SCOP2B SuperfamilyChromo domain-like 8038630 3000161 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyCore histone-like 8039340 3001387 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyCore histone-like 8039340 3001387 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
K [auth M]PF15275PEHE domain (PEHE)PEHE domain- Family
PF15511Centromere kinetochore component CENP-T histone fold (CENP-T_C)Centromere kinetochore component CENP-T histone foldCENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ...CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly associate with CENP-A, but with histone H3 in the centromere region. CENP-T and -W form a hetero-tetramer with CENP-S and -X and bind to a ~100 bp region of nucleosome-free DNA forming a nucleosome-like structure. The DNA-CENP-T-W-S-X complex is likely to be associated with histone H3-containing nucleosomes rather than with CENP-nucleosomes. This domain is the C-terminal histone fold domain of CENP-T, which associates with chromatin [2-3].
Domain
C, G
PF16211C-terminus of histone H2A (Histone_H2A_C)C-terminus of histone H2A- Family
PF15511Centromere kinetochore component CENP-T histone fold (CENP-T_C)Centromere kinetochore component CENP-T histone foldCENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly asso ...CENP-T is a family of vertebral kinetochore proteins that associates directly with CENP-W. The N-terminus of CENP-T proteins interacts directly with the Ndc80 complex in the outer kinetochore. Importantly, the CENP-T-W complex does not directly associate with CENP-A, but with histone H3 in the centromere region. CENP-T and -W form a hetero-tetramer with CENP-S and -X and bind to a ~100 bp region of nucleosome-free DNA forming a nucleosome-like structure. The DNA-CENP-T-W-S-X complex is likely to be associated with histone H3-containing nucleosomes rather than with CENP-nucleosomes. This domain is the C-terminal histone fold domain of CENP-T, which associates with chromatin [2-3].
Domain
M [auth O]PF17772MYST family zinc finger domain (zf-MYST)MYST family zinc finger domainThis zinc finger domain is found in the MYST family of histone acetyltransferases [1]. Domain
M [auth O]PF11717RNA binding activity-knot of a chromodomain (Tudor-knot)RNA binding activity-knot of a chromodomain- Family
M [auth O]PF01853MOZ/SAS family (MOZ_SAS)MOZ/SAS familyThis region of these proteins has been suggested to be homologous to acetyltransferases [1]. Domain
A, E
PF00125Core histone H2A/H2B/H3/H4 domain (Histone)Core histone H2A/H2B/H3/H4 domainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
L [auth N]Protein male-specific lethal-3
K [auth M]Protein male-specific lethal-1
DNA---
DNA---
Histone H4
D, H
Histone H2B type 1-C/E/F/G/I
C, G
Histone H2A type 1-C
Histone H4
M [auth O]Histone acetyltransferase MOF
A, E
Histone H3.1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
L [auth N]IPR016197Chromo-like domain superfamilyHomologous Superfamily
L [auth N]IPR008676MRGFamily
L [auth N]IPR038217MRG, C-terminal domain superfamilyHomologous Superfamily
L [auth N]IPR053820MSL3 chromodomain-likeDomain
L [auth N]IPR026541MRG domainDomain
K [auth M]IPR026711Protein male-specific lethal-1Family
K [auth M]IPR029332PEHE domainDomain
IPR009072Histone-foldHomologous Superfamily
IPR035425CENP-T/Histone H4, histone foldDomain
IPR001951Histone H4Family
IPR019809Histone H4, conserved siteConserved Site
IPR004823TATA box binding protein associated factor (TAF), histone-like fold domainDomain
D, H
IPR009072Histone-foldHomologous Superfamily
D, H
IPR000558Histone H2BFamily
D, H
IPR007125Core Histone H2A/H2B/H3 domainDomain
D, H
IPR055333Histone H2B, conserved siteConserved Site
C, G
IPR009072Histone-foldHomologous Superfamily
C, G
IPR002119Histone H2AFamily
C, G
IPR007125Core Histone H2A/H2B/H3 domainDomain
C, G
IPR061508Histone H2A, histone foldDomain
C, G
IPR032454Histone H2A, C-terminal domainDomain
C, G
IPR032458Histone H2A conserved siteConserved Site
IPR009072Histone-foldHomologous Superfamily
IPR035425CENP-T/Histone H4, histone foldDomain
IPR001951Histone H4Family
IPR019809Histone H4, conserved siteConserved Site
IPR004823TATA box binding protein associated factor (TAF), histone-like fold domainDomain
M [auth O]IPR002717Histone acetyltransferase domain, MYST-typeDomain
M [auth O]IPR016197Chromo-like domain superfamilyHomologous Superfamily
M [auth O]IPR050603MYST family histone acetyltransferasesFamily
M [auth O]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
M [auth O]IPR025995RNA binding activity-knot of a chromodomainDomain
M [auth O]IPR016181Acyl-CoA N-acyltransferaseHomologous Superfamily
M [auth O]IPR040706MYST, zinc finger domainDomain
A, E
IPR009072Histone-foldHomologous Superfamily
A, E
IPR007125Core Histone H2A/H2B/H3 domainDomain
A, E
IPR000164Histone H3/CENP-AFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
:  P62805
D, H
:  P62807
C, G
:  Q93077
:  P62805
A, E
:  P68431

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
ALY Parent Component: LYS

:  AA0055

:  N6-acetyl-L-lysine MOD:00064
M [auth O]ALY Parent Component: LYS

:  AA0055 , AA0055

:  N6-acetyl-L-lysine MOD:00064 , N6-acetyl-L-lysine MOD:00064