9J4V | pdb_00009j4v

Structural basis for recognition of SARS-CoV-2 conserved nucleocapside epitopes by dominant T cell receptors


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DSCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8003766 3000071 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8003766 3000071 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyMHC antigen-recognition domain 8055662 3000521 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054581 3000071 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyMHC antigen-recognition domain 8055662 3000521 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyImmunoglobulin (Ig) domain-like 8054581 3000071 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B, D
PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domainDomain
A, C
PF00129Class I Histocompatibility antigen, domains alpha 1 and 2 (MHC_I)Class I Histocompatibility antigen, domains alpha 1 and 2Domain
A, C
PF07654Immunoglobulin C1-set domain (C1-set)Immunoglobulin C1-set domainDomain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
E, F
Nucleoprotein
B, D
Beta-2-microglobulin
A, C
HLA class I histocompatibility antigen, B alpha chain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
E, F
IPR044344Nucleocapsid (N) protein, C-terminal domain, coronavirusDomain
E, F
IPR043505Nucleocapsid protein, betacoronavirusFamily
E, F
IPR001218Nucleocapsid protein, coronavirusFamily
E, F
IPR037195Nucleocapsid protein, N-terminalHomologous Superfamily
E, F
IPR037179Nucleocapsid protein, C-terminalHomologous Superfamily
E, F
IPR044345Nucleocapsid (N) protein, N-terminal domain, coronavirusDomain
B, D
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
B, D
IPR003006Immunoglobulin/major histocompatibility complex, conserved siteConserved Site
B, D
IPR013783Immunoglobulin-like foldHomologous Superfamily
B, D
IPR007110Immunoglobulin-like domainDomain
B, D
IPR050160Major Histocompatibility Complex/ImmunoglobulinFamily
B, D
IPR003597Immunoglobulin C1-setDomain
B, D
IPR015707Beta-2-MicroglobulinFamily
A, C
IPR036179Immunoglobulin-like domain superfamilyHomologous Superfamily
A, C
IPR050208Antigen-presenting and immune regulatory MHC class I-relatedFamily
A, C
IPR003597Immunoglobulin C1-setDomain
A, C
IPR010579MHC class I, alpha chain, C-terminalDomain
A, C
IPR011161MHC class I-like antigen recognition-likeDomain
A, C
IPR011162MHC classes I/II-like antigen recognition proteinHomologous Superfamily
A, C
IPR001039MHC class I alpha chain, alpha1 alpha2 domainsDomain
A, C
IPR003006Immunoglobulin/major histocompatibility complex, conserved siteConserved Site
A, C
IPR037055MHC class I-like antigen recognition-like superfamilyHomologous Superfamily
A, C
IPR013783Immunoglobulin-like foldHomologous Superfamily
A, C
IPR007110Immunoglobulin-like domainDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
B, D
PharosP61769
A, C
PharosP01889