8SE1 | pdb_00008se1

Structure of Full-length Human Protein Kinase C Beta 2 (PKCBII) in the Inactive Conformation

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Protein kinase-like (PK-like)	8067251	3000066	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Protein kinase-like (PK-like)	8067251	3000066	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00130	Phorbol esters/diacylglycerol binding domain (C1 domain) (C1_1)	Phorbol esters/diacylglycerol binding domain (C1 domain)	This domain is also known as the Protein kinase C conserved region 1 (C1) domain.	Domain
A, B	PF00168	C2 domain (C2)	C2 domain		Domain
A, B	PF00069	Protein kinase domain (Pkinase)	Protein kinase domain		Domain
A, B	PF00433	Protein kinase C terminal domain (Pkinase_C)	Protein kinase C terminal domain	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Protein kinase C beta type	protein binding binding histone binding channel regulator activity ion channel regulator activity calcium channel regulator activity molecular function regulator activity transporter regulator activity adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding protein binding binding histone binding channel regulator activity ion channel regulator activity calcium channel regulator activity molecular function regulator activity transporter regulator activity adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding protein serine/threonine kinase activity histone H3T6 kinase activity catalytic activity, acting on a protein kinase activity protein kinase activity transferase activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups histone H3 kinase activity histone modifying activity catalytic activity histone kinase activity calcium,diacylglycerol-dependent serine/threonine kinase activity diacylglycerol-dependent serine/threonine kinase activity calcium-dependent protein serine/threonine kinase activity chromatin binding transcription coactivator activity transcription regulator activity transcription coregulator activity protein-macromolecule adaptor activity molecular adaptor activity protein serine kinase activity transcription factor binding RNA polymerase II-specific DNA-binding transcription factor binding nuclear receptor binding DNA-binding transcription factor binding nuclear androgen receptor binding kinase binding protein kinase C binding enzyme binding protein kinase binding cation binding transition metal ion binding zinc ion binding metal ion binding	trans-synaptic signaling regulation of biological process regulation of signaling regulation of cellular process modulation of chemical synaptic transmission signaling biological regulation cell-cell signaling presynaptic modulation of chemical synaptic transmission chemical synaptic transmission cell communication synaptic signaling regulation of trans-synaptic signaling anterograde trans-synaptic signaling trans-synaptic signaling regulation of biological process regulation of signaling regulation of cellular process modulation of chemical synaptic transmission signaling biological regulation cell-cell signaling presynaptic modulation of chemical synaptic transmission chemical synaptic transmission cell communication synaptic signaling regulation of trans-synaptic signaling anterograde trans-synaptic signaling regulation of cell communication cellular process response to stimulus immune response immune system process adaptive immune response cellular response to stimulus positive regulation of cell communication cellular response to growth factor stimulus positive regulation of signal transduction positive regulation of biological process regulation of signal transduction cell surface receptor protein tyrosine kinase signaling pathway regulation of vascular endothelial growth factor receptor signaling pathway positive regulation of response to stimulus cellular response to endogenous stimulus signal transduction enzyme-linked receptor protein signaling pathway positive regulation of cellular process cell surface receptor signaling pathway response to endogenous stimulus regulation of cellular response to growth factor stimulus vascular endothelial growth factor receptor signaling pathway regulation of response to stimulus positive regulation of vascular endothelial growth factor receptor signaling pathway response to growth factor positive regulation of signaling apoptotic process cell death programmed cell death membrane organization cellular component disassembly nuclear membrane disassembly mitotic cell cycle membrane disassembly nuclear membrane organization cellular component organization mitotic nuclear membrane disassembly nucleus organization organelle organization mitotic cell cycle process nuclear envelope organization cell cycle cellular component organization or biogenesis endomembrane system organization cell cycle process multicellular organismal process B cell activation cell activation lymphocyte activation leukocyte activation regulation of localization hexose transmembrane transport regulation of transport transport carbohydrate transport establishment of localization transmembrane transport localization regulation of transmembrane transport D-glucose transmembrane transport regulation of D-glucose transmembrane transport monosaccharide transmembrane transport carbohydrate transmembrane transport inorganic ion homeostasis intracellular calcium ion homeostasis homeostatic process calcium ion homeostasis cellular homeostasis chemical homeostasis intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis negative regulation of D-glucose transmembrane transport negative regulation of biological process negative regulation of transport negative regulation of transmembrane transport negative regulation of cellular process cellular response to nitrogen compound negative regulation of signaling response to peptide hormone insulin receptor signaling pathway regulation of cellular response to insulin stimulus negative regulation of cell communication response to hormone cellular response to hormone stimulus negative regulation of response to stimulus regulation of insulin receptor signaling pathway response to oxygen-containing compound cellular response to peptide hormone stimulus response to nitrogen compound negative regulation of signal transduction cellular response to oxygen-containing compound cellular response to chemical stimulus negative regulation of cellular response to insulin stimulus negative regulation of insulin receptor signaling pathway response to chemical response to insulin cellular response to insulin stimulus establishment of protein localization nitrogen compound transport protein transport macromolecule localization lipoprotein transport intracellular protein localization lipoprotein localization protein phosphorylation phosphorylation primary metabolic process macromolecule modification phosphate-containing compound metabolic process metabolic process protein metabolic process macromolecule metabolic process protein modification process phosphorus metabolic process cellular localization regulated exocytosis synaptic vesicle cycle synaptic vesicle exocytosis vesicle-mediated transport vesicle-mediated transport in synapse regulation of regulated secretory pathway regulation of secretion by cell secretion by cell signal release establishment of localization in cell neurotransmitter secretion secretion regulation of neurotransmitter transport regulation of synaptic vesicle exocytosis export from cell neurotransmitter transport regulation of vesicle-mediated transport regulation of secretion signal release from synapse exocytosis regulation of neurotransmitter secretion regulation of exocytosis positive regulation of canonical NF-kappaB signal transduction intracellular signal transduction regulation of intracellular signal transduction intracellular signaling cassette positive regulation of intracellular signal transduction canonical NF-kappaB signal transduction regulation of canonical NF-kappaB signal transduction immune response-regulating cell surface receptor signaling pathway immune response-activating signaling pathway immune response-regulating signaling pathway positive regulation of immune response regulation of immune system process positive regulation of immune system process immune response-activating cell surface receptor signaling pathway B cell receptor signaling pathway regulation of immune response antigen receptor-mediated signaling pathway activation of immune response phospholipase C-activating G protein-coupled receptor signaling pathway phospholipase C-activating G protein-coupled acetylcholine receptor signaling pathway cellular response to acetylcholine acetylcholine receptor signaling pathway postsynaptic signal transduction G protein-coupled acetylcholine receptor signaling pathway response to acetylcholine G protein-coupled receptor signaling pathway regulation of developmental process angiogenesis regulation of vasculature development positive regulation of developmental process multicellular organism development tube morphogenesis anatomical structure development regulation of multicellular organismal process regulation of anatomical structure morphogenesis blood vessel development system development developmental process regulation of multicellular organismal development blood vessel morphogenesis tube development positive regulation of angiogenesis vasculature development circulatory system development anatomical structure morphogenesis positive regulation of vasculature development regulation of angiogenesis anatomical structure formation involved in morphogenesis positive regulation of multicellular organismal process protein kinase C signaling monoatomic ion transport monoatomic cation transport calcium ion transport metal ion transport RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II regulation of biosynthetic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of metabolic process positive regulation of establishment of protein localization positive regulation of insulin secretion regulation of biological quality regulation of peptide hormone secretion regulation of hormone levels positive regulation of peptide hormone secretion establishment of protein localization to extracellular region protein secretion regulation of protein secretion positive regulation of protein localization regulation of hormone secretion regulation of protein localization regulation of peptide secretion positive regulation of secretion by cell hormone secretion protein localization to extracellular region positive regulation of protein transport peptide secretion positive regulation of hormone secretion positive regulation of secretion amide transport positive regulation of peptide secretion regulation of peptide transport regulation of establishment of protein localization regulation of protein transport positive regulation of protein secretion peptide transport positive regulation of transport regulation of insulin secretion peptide hormone secretion hormone transport insulin secretion cellular response to carbohydrate stimulus response to carbohydrate	extracellular exosome membrane-bounded organelle extracellular vesicle cellular anatomical structure extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol spectrin extracellular exosome membrane-bounded organelle extracellular vesicle cellular anatomical structure extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol spectrin protein-containing complex cell cortex cortical cytoskeleton intracellular membraneless organelle actin cytoskeleton intracellular organelle cell periphery cytoskeleton membraneless organelle cortical actin cytoskeleton axon synapse neuron projection axon terminus plasma membrane bounded cell projection presynapse cell projection distal axon calyx of Held cell junction neuron projection terminus cytosolic region presynaptic cytosol plasma membrane membrane nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR020454	Diacylglycerol/phorbol-ester binding	Domain
A, B	IPR000719	Protein kinase domain	Domain
A, B	IPR017892	Protein kinase, C-terminal	Domain
A, B	IPR017441	Protein kinase, ATP binding site	Binding Site
A, B	IPR000008	C2 domain	Domain
A, B	IPR000961	AGC-kinase, C-terminal	Domain
A, B	IPR014375	Protein kinase C, alpha/beta/gamma types	Family
A, B	IPR002219	Protein kinase C-like, phorbol ester/diacylglycerol-binding domain	Domain
A, B	IPR011009	Protein kinase-like domain superfamily	Homologous Superfamily
A, B	IPR034664	Classical protein kinase C beta, catalytic domain	Domain
A, B	IPR035892	C2 domain superfamily	Homologous Superfamily
A, B	IPR046349	C1-like domain superfamily	Homologous Superfamily
A, B	IPR008271	Serine/threonine-protein kinase, active site	Active Site

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: P05771	adult T-cell leukemia/lymphoma type 2 diabetes mellitus Cardiomegaly ulcerative colitis glioblastoma hyperglycemia colorectal cancer head and neck cancer Sjogren syndrome invasive ductal breast carcinoma lung adenocarcinoma acute T cell leukemia lymphoplasmacytic lymphoma astrocytic tumor malignant ependymoma adult T-cell leukemia/lymphoma type 2 diabetes mellitus Cardiomegaly ulcerative colitis glioblastoma hyperglycemia colorectal cancer head and neck cancer Sjogren syndrome invasive ductal breast carcinoma lung adenocarcinoma acute T cell leukemia lymphoplasmacytic lymphoma astrocytic tumor malignant ependymoma autism maturity-onset diabetes of the young non-small cell lung carcinoma colorectal carcinoma ovarian cancer Down syndrome primary biliary cholangitis gastric neoplasm psoriasis hereditary diffuse gastric adenocarcinoma subependymal giant cell astrocytoma inflammatory bowel disease large cell medulloblastoma lung cancer major depressive disorder atopic eczema malignant glioma medulloblastoma colorectal adenocarcinoma oligodendroglioma Pick disease primitive neuroectodermal tumor sarcoidosis tuberculosis interstitial cystitis lung carcinoma Alzheimer disease malignant colon neoplasm atypical teratoid rhabdoid tumor nasopharyngeal carcinoma osteosarcoma pilocytic astrocytoma gastric cancer progressive supranuclear palsy

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A, B	SEP	Parent Component: SER RESID: AA0037 PSI-MOD : O-phospho-L-serine MOD:00046
A, B	TPO	Parent Component: THR RESID: AA0037 , AA0038 PSI-MOD : O-phospho-L-serine MOD:00046 , O-phospho-L-threonine MOD:00047

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.