8ERA | pdb_00008era

RMC-5552 in complex with mTORC1 and FKBP12


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyFKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP) 8036936 3001600 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyRotamase-like 8035974 3000622 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BFKBP_Ce8eraB1 A: a+b two layersX: FKBP-likeH: FKBP-likeT: FKBP-likeF: FKBP_CECOD (1.6)
CANAPC4_WD40_9e8eraC1 A: beta duplicates or obligate multimersX: beta-propeller-likeH: beta-propellerT: 7-bladedF: ANAPC4_WD40_9ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B3.10.50.40 Alpha Beta Roll Chitinase A domain 3CATH (utative)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF02260FATC domain (FATC)FATC domain- Family
PF08771FKBP12-rapamycin binding domain (FRB_dom)FKBP12-rapamycin binding domainThe macrolide antibiotic rapamycin and the cytosol protein FKBP12 can form a complex which specifically inhibits the TORC1 complex, leading to growth arrest. The FKBP12-rapamycin complex interferes with TORC1 function by binding to the FKBP12-rapa ...The macrolide antibiotic rapamycin and the cytosol protein FKBP12 can form a complex which specifically inhibits the TORC1 complex, leading to growth arrest. The FKBP12-rapamycin complex interferes with TORC1 function by binding to the FKBP12-rapamycin binding domain (FRB) of the TOR proteins. This entry represents the FRB domain [1, 2].
Domain
PF00454Phosphatidylinositol 3- and 4-kinase (PI3_PI4_kinase)Phosphatidylinositol 3- and 4-kinase- Family
PF11865Serine/threonine-protein kinase mTOR domain (mTOR_dom)Serine/threonine-protein kinase mTOR domain- Repeat
PF02259FAT domain (FAT)FAT domain- Repeat
PF00254FKBP-type peptidyl-prolyl cis-trans isomerase (FKBP_C)FKBP-type peptidyl-prolyl cis-trans isomeraseDomain
PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
D [auth Y]PF14538Raptor N-terminal CASPase like domain (Raptor_N)Raptor N-terminal CASPase like domainThis domain is found at the N-terminus of the Raptor protein. It has been identified to have a CASPase like structure [1]. It conserves the characteristic cys/his dyad of the caspases suggesting it may have a peptidase activity. Domain
D [auth Y]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
D [auth Y]PF02985HEAT repeat (HEAT)HEAT repeat- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Serine/threonine-protein kinase mTOR
Peptidyl-prolyl cis-trans isomerase FKBP1A
Target of rapamycin complex subunit LST8
D [auth Y]Regulatory-associated protein of mTOR

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR016024Armadillo-type foldHomologous Superfamily
IPR009076FKBP12-rapamycin binding domainDomain
IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
IPR036940Phosphatidylinositol 3-/4-kinase, catalytic domain superfamilyHomologous Superfamily
IPR014009PIK-related kinase, FAT domainDomain
IPR026683Serine/threonine-protein kinase TOR, catalytic domainDomain
IPR003151PIK-related kinase, FATDomain
IPR036738FKBP12-rapamycin binding domain superfamilyHomologous Superfamily
IPR003152FATC domainDomain
IPR024585Serine/threonine-protein kinase mTOR domainDomain
IPR011989Armadillo-like helicalHomologous Superfamily
IPR000403Phosphatidylinositol 3-/4-kinase, catalytic domainDomain
IPR050517DNA Damage Response and Repair KinaseFamily
IPR018936Phosphatidylinositol 3-/4-kinase, conserved siteConserved Site
IPR011009Protein kinase-like domain superfamilyHomologous Superfamily
IPR046357Peptidyl-prolyl cis-trans isomerase domain superfamilyHomologous Superfamily
IPR050689FKBP-type Peptidyl-prolyl cis-trans IsomeraseFamily
IPR001179FKBP-type peptidyl-prolyl cis-trans isomerase domainDomain
IPR019775WD40 repeat, conserved siteConserved Site
IPR011047Quinoprotein alcohol dehydrogenase-like superfamilyHomologous Superfamily
IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
IPR001680WD40 repeatRepeat
IPR037588Target of rapamycin complex subunit LST8Family
D [auth Y]IPR016024Armadillo-type foldHomologous Superfamily
D [auth Y]IPR004083Regulatory associated protein of TORFamily
D [auth Y]IPR029347Raptor, N-terminal CASPase-like domainDomain
D [auth Y]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
D [auth Y]IPR000357HEAT repeatRepeat
D [auth Y]IPR011989Armadillo-like helicalHomologous Superfamily
D [auth Y]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
D [auth Y]IPR001680WD40 repeatRepeat

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosP42345
PharosP62942
PharosQ9BVC4
D [auth Y]PharosQ8N122