6YAB | pdb_00006yab

Crystal structure of PnrA from S. pneumoniae in complex with uridine

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D [auth DDD]	Bmp_1st	e6yabDDD2	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: Periplasmic binding protein-like I	F: Bmp_1st	ECOD (1.6)
D [auth DDD]	Bmp_2nd	e6yabDDD1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: Periplasmic binding protein-like I	F: Bmp_2nd	ECOD (1.6)
B [auth AAA]	Bmp_1st	e6yabAAA2	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: Periplasmic binding protein-like I	F: Bmp_1st	ECOD (1.6)
B [auth AAA]	Bmp_2nd	e6yabAAA1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: Periplasmic binding protein-like I	F: Bmp_2nd	ECOD (1.6)
C [auth BBB]	Bmp_1st	e6yabBBB1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: Periplasmic binding protein-like I	F: Bmp_1st	ECOD (1.6)
C [auth BBB]	Bmp_2nd	e6yabBBB2	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: Periplasmic binding protein-like I	F: Bmp_2nd	ECOD (1.6)
A [auth CCC]	Bmp_1st	e6yabCCC1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: Periplasmic binding protein-like I	F: Bmp_1st	ECOD (1.6)
A [auth CCC]	Bmp_2nd	e6yabCCC2	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Class I glutamine amidotransferase-like	T: Periplasmic binding protein-like I	F: Bmp_2nd	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
D [auth DDD]	PF02608	ABC transporter substrate-binding protein PnrA-like (Bmp)	ABC transporter substrate-binding protein PnrA-like	-	Family
B [auth AAA]	PF02608	ABC transporter substrate-binding protein PnrA-like (Bmp)	ABC transporter substrate-binding protein PnrA-like	-	Family
A [auth CCC], C [auth BBB]	PF02608	ABC transporter substrate-binding protein PnrA-like (Bmp)	ABC transporter substrate-binding protein PnrA-like	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
D [auth DDD]	Lipoprotein	-	-	cell periphery cellular anatomical structure plasma membrane membrane
B [auth AAA]	Lipoprotein	-	-	cell periphery cellular anatomical structure plasma membrane membrane
A [auth CCC], C [auth BBB]	Lipoprotein	-	-	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
D [auth DDD]	IPR028082	Periplasmic binding protein-like I	Homologous Superfamily
D [auth DDD]	IPR050957	BMP Lipoprotein	Family
D [auth DDD]	IPR003760	ABC transporter substrate-binding protein PnrA-like	Domain
B [auth AAA]	IPR028082	Periplasmic binding protein-like I	Homologous Superfamily
B [auth AAA]	IPR050957	BMP Lipoprotein	Family
B [auth AAA]	IPR003760	ABC transporter substrate-binding protein PnrA-like	Domain
A [auth CCC], C [auth BBB]	IPR028082	Periplasmic binding protein-like I	Homologous Superfamily
A [auth CCC], C [auth BBB]	IPR050957	BMP Lipoprotein	Family
A [auth CCC], C [auth BBB]	IPR003760	ABC transporter substrate-binding protein PnrA-like	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.