6Y67 | pdb_00006y67

Structure of apo Finch Polyomavirus VP1

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
Z [auth ZZZ]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)
Y [auth YYY]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)
X [auth XXX]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)
W [auth WWW]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)
V [auth VVV]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)
U [auth UUU]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)
T [auth TTT]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)
S [auth SSS]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)
R [auth RRR]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)
Q [auth QQQ]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)
P [auth PPP]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)
O [auth OOO]	SCOP2 Family	papovaviridae-like vp	8100787	4003485	SCOP2 (2022-06-29)
O [auth OOO]	SCOP2 Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2 (2022-06-29)
N [auth NNN]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)
M [auth MMM]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)
L [auth LLL]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)
K [auth KKK]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)
J [auth JJJ]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)
I [auth III]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)
H [auth HHH]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)
G [auth GGG]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)
F [auth FFF]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)
E [auth EEE]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)
DA [auth ddd]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)
D [auth DDD]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)
CA [auth ccc]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)
C [auth CCC]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)
BA [auth bbb]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)
B [auth BBB]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)
AA [auth aaa]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)
A [auth AAA]	SCOP2B Superfamily	Group I dsDNA viruses	8100788	3000939	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Z [auth ZZZ]	Polyoma_coat	e6y67ZZZ1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Polyoma_coat	ECOD (1.6)
Y [auth YYY]	Polyoma_coat	e6y67YYY1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Polyoma_coat	ECOD (1.6)
X [auth XXX]	Polyoma_coat	e6y67XXX1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Polyoma_coat	ECOD (1.6)
W [auth WWW]	Polyoma_coat	e6y67WWW1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Polyoma_coat	ECOD (1.6)
V [auth VVV]	Polyoma_coat	e6y67VVV1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Polyoma_coat	ECOD (1.6)
U [auth UUU]	Polyoma_coat	e6y67UUU1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Polyoma_coat	ECOD (1.6)
T [auth TTT]	Polyoma_coat	e6y67TTT1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Polyoma_coat	ECOD (1.6)
S [auth SSS]	Polyoma_coat	e6y67SSS1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Polyoma_coat	ECOD (1.6)
R [auth RRR]	Polyoma_coat	e6y67RRR1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Polyoma_coat	ECOD (1.6)
Q [auth QQQ]	Polyoma_coat	e6y67QQQ1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Polyoma_coat	ECOD (1.6)
P [auth PPP]	Polyoma_coat	e6y67PPP1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Polyoma_coat	ECOD (1.6)
O [auth OOO]	Polyoma_coat	e6y67OOO1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Polyoma_coat	ECOD (1.6)
N [auth NNN]	Polyoma_coat	e6y67NNN1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Polyoma_coat	ECOD (1.6)
M [auth MMM]	Polyoma_coat	e6y67MMM1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Polyoma_coat	ECOD (1.6)
L [auth LLL]	Polyoma_coat	e6y67LLL1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Polyoma_coat	ECOD (1.6)
K [auth KKK]	Polyoma_coat	e6y67KKK1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Polyoma_coat	ECOD (1.6)
J [auth JJJ]	Polyoma_coat	e6y67JJJ1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Polyoma_coat	ECOD (1.6)
I [auth III]	Polyoma_coat	e6y67III1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Polyoma_coat	ECOD (1.6)
H [auth HHH]	Polyoma_coat	e6y67HHH1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Polyoma_coat	ECOD (1.6)
G [auth GGG]	Polyoma_coat	e6y67GGG1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Polyoma_coat	ECOD (1.6)
F [auth FFF]	Polyoma_coat	e6y67FFF1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Polyoma_coat	ECOD (1.6)
E [auth EEE]	Polyoma_coat	e6y67EEE1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Polyoma_coat	ECOD (1.6)
DA [auth ddd]	Polyoma_coat	e6y67ddd1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Polyoma_coat	ECOD (1.6)
D [auth DDD]	Polyoma_coat	e6y67DDD1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Polyoma_coat	ECOD (1.6)
CA [auth ccc]	Polyoma_coat	e6y67ccc1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Polyoma_coat	ECOD (1.6)
C [auth CCC]	Polyoma_coat	e6y67CCC1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Polyoma_coat	ECOD (1.6)
BA [auth bbb]	Polyoma_coat	e6y67bbb1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Polyoma_coat	ECOD (1.6)
B [auth BBB]	Polyoma_coat	e6y67BBB1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Polyoma_coat	ECOD (1.6)
AA [auth aaa]	Polyoma_coat	e6y67aaa1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Polyoma_coat	ECOD (1.6)
A [auth AAA]	Polyoma_coat	e6y67AAA1	A: beta sandwiches	X: jelly-roll	H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology)	T: Nucleoplasmin-like/VP (viral coat and capsid proteins)	F: Polyoma_coat	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth AAA], AA [auth aaa], B [auth BBB], BA [auth bbb], C [auth CCC], A [auth AAA], AA [auth aaa], B [auth BBB], BA [auth bbb], C [auth CCC], CA [auth ccc], D [auth DDD], DA [auth ddd], E [auth EEE], F [auth FFF], G [auth GGG], H [auth HHH], I [auth III], J [auth JJJ], K [auth KKK], L [auth LLL], M [auth MMM], N [auth NNN], O [auth OOO], P [auth PPP], Q [auth QQQ], R [auth RRR], S [auth SSS], T [auth TTT], U [auth UUU], V [auth VVV], W [auth WWW], X [auth XXX], Y [auth YYY], Z [auth ZZZ]	PF00718	Polyomavirus coat protein (Polyoma_coat)	Polyomavirus coat protein		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth AAA], AA [auth aaa], B [auth BBB], BA [auth bbb], C [auth CCC], A [auth AAA], AA [auth aaa], B [auth BBB], BA [auth bbb], C [auth CCC], CA [auth ccc], D [auth DDD], DA [auth ddd], E [auth EEE], F [auth FFF], G [auth GGG], H [auth HHH], I [auth III], J [auth JJJ], K [auth KKK], L [auth LLL], M [auth MMM], N [auth NNN], O [auth OOO], P [auth PPP], Q [auth QQQ], R [auth RRR], S [auth SSS], T [auth TTT], U [auth UUU], V [auth VVV], W [auth WWW], X [auth XXX], Y [auth YYY], Z [auth ZZZ]	Capsid protein VP1	structural molecule activity	virion attachment to host cell biological process involved in interspecies interaction between organisms adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host endocytosis involved in viral entry into host cell	viral capsid icosahedral viral capsid T=7 icosahedral viral capsid virion component host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth AAA], AA [auth aaa], B [auth BBB], BA [auth bbb], C [auth CCC], A [auth AAA], AA [auth aaa], B [auth BBB], BA [auth bbb], C [auth CCC], CA [auth ccc], D [auth DDD], DA [auth ddd], E [auth EEE], F [auth FFF], G [auth GGG], H [auth HHH], I [auth III], J [auth JJJ], K [auth KKK], L [auth LLL], M [auth MMM], N [auth NNN], O [auth OOO], P [auth PPP], Q [auth QQQ], R [auth RRR], S [auth SSS], T [auth TTT], U [auth UUU], V [auth VVV], W [auth WWW], X [auth XXX], Y [auth YYY], Z [auth ZZZ]	IPR011222	Double-stranded DNA virus, group I, capsid	Homologous Superfamily
A [auth AAA], AA [auth aaa], B [auth BBB], BA [auth bbb], C [auth CCC], A [auth AAA], AA [auth aaa], B [auth BBB], BA [auth bbb], C [auth CCC], CA [auth ccc], D [auth DDD], DA [auth ddd], E [auth EEE], F [auth FFF], G [auth GGG], H [auth HHH], I [auth III], J [auth JJJ], K [auth KKK], L [auth LLL], M [auth MMM], N [auth NNN], O [auth OOO], P [auth PPP], Q [auth QQQ], R [auth RRR], S [auth SSS], T [auth TTT], U [auth UUU], V [auth VVV], W [auth WWW], X [auth XXX], Y [auth YYY], Z [auth ZZZ]	IPR000662	Capsid protein VP1,Polyomavirus	Family
A [auth AAA], AA [auth aaa], B [auth BBB], BA [auth bbb], C [auth CCC], A [auth AAA], AA [auth aaa], B [auth BBB], BA [auth bbb], C [auth CCC], CA [auth ccc], D [auth DDD], DA [auth ddd], E [auth EEE], F [auth FFF], G [auth GGG], H [auth HHH], I [auth III], J [auth JJJ], K [auth KKK], L [auth LLL], M [auth MMM], N [auth NNN], O [auth OOO], P [auth PPP], Q [auth QQQ], R [auth RRR], S [auth SSS], T [auth TTT], U [auth UUU], V [auth VVV], W [auth WWW], X [auth XXX], Y [auth YYY], Z [auth ZZZ]	IPR036931	Polyomavirus capsid protein VP1 superfamily	Homologous Superfamily