5XZQ | pdb_00005xzq

Hydroxynitrile lyase from Passiflora edulis (PeHNL)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
L	d5xzql_	Alpha and beta proteins (a+b)	Ferredoxin-like	Dimeric alpha+beta barrel	automated matches	automated matches	Passion fruit (Passiflora edulis ) [TaxId: 78168 ],	SCOPe (2.08)
K	d5xzqk_	Alpha and beta proteins (a+b)	Ferredoxin-like	Dimeric alpha+beta barrel	automated matches	automated matches	Passion fruit (Passiflora edulis ) [TaxId: 78168 ],	SCOPe (2.08)
J	d5xzqj_	Alpha and beta proteins (a+b)	Ferredoxin-like	Dimeric alpha+beta barrel	automated matches	automated matches	Passion fruit (Passiflora edulis ) [TaxId: 78168 ],	SCOPe (2.08)
I	d5xzqi_	Alpha and beta proteins (a+b)	Ferredoxin-like	Dimeric alpha+beta barrel	automated matches	automated matches	Passion fruit (Passiflora edulis ) [TaxId: 78168 ],	SCOPe (2.08)
H	d5xzqh_	Alpha and beta proteins (a+b)	Ferredoxin-like	Dimeric alpha+beta barrel	automated matches	automated matches	Passion fruit (Passiflora edulis ) [TaxId: 78168 ],	SCOPe (2.08)
G	d5xzqg_	Alpha and beta proteins (a+b)	Ferredoxin-like	Dimeric alpha+beta barrel	automated matches	automated matches	Passion fruit (Passiflora edulis ) [TaxId: 78168 ],	SCOPe (2.08)
F	d5xzqf_	Alpha and beta proteins (a+b)	Ferredoxin-like	Dimeric alpha+beta barrel	automated matches	automated matches	Passion fruit (Passiflora edulis ) [TaxId: 78168 ],	SCOPe (2.08)
E	d5xzqe_	Alpha and beta proteins (a+b)	Ferredoxin-like	Dimeric alpha+beta barrel	automated matches	automated matches	Passion fruit (Passiflora edulis ) [TaxId: 78168 ],	SCOPe (2.08)
D	d5xzqd_	Alpha and beta proteins (a+b)	Ferredoxin-like	Dimeric alpha+beta barrel	automated matches	automated matches	Passion fruit (Passiflora edulis ) [TaxId: 78168 ],	SCOPe (2.08)
C	d5xzqc_	Alpha and beta proteins (a+b)	Ferredoxin-like	Dimeric alpha+beta barrel	automated matches	automated matches	Passion fruit (Passiflora edulis ) [TaxId: 78168 ],	SCOPe (2.08)
B	d5xzqb_	Alpha and beta proteins (a+b)	Ferredoxin-like	Dimeric alpha+beta barrel	automated matches	automated matches	Passion fruit (Passiflora edulis ) [TaxId: 78168 ],	SCOPe (2.08)
A	d5xzqa_	Alpha and beta proteins (a+b)	Ferredoxin-like	Dimeric alpha+beta barrel	automated matches	automated matches	Passion fruit (Passiflora edulis ) [TaxId: 78168 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
L	SCOP2B Superfamily	Dimeric alpha+beta barrel	8088470	3000089	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Dimeric alpha+beta barrel	8088470	3000089	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Dimeric alpha+beta barrel	8088470	3000089	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Dimeric alpha+beta barrel	8088470	3000089	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Dimeric alpha+beta barrel	8088470	3000089	SCOP2B (2022-06-29)
G	SCOP2 Family	Plant stress-induced protein	8088469	4000637	SCOP2 (2022-06-29)
G	SCOP2 Superfamily	Dimeric alpha+beta barrel	8088470	3000089	SCOP2 (2022-06-29)
F	SCOP2B Superfamily	Dimeric alpha+beta barrel	8088470	3000089	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Dimeric alpha+beta barrel	8088470	3000089	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Dimeric alpha+beta barrel	8088470	3000089	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Dimeric alpha+beta barrel	8088470	3000089	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Dimeric alpha+beta barrel	8088470	3000089	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Dimeric alpha+beta barrel	8088470	3000089	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	Dabb	e5xzqL1	A: a+b two layers	X: Alpha-beta plaits	H: Dimeric alpha+beta barrel (From Topology)	T: Dimeric alpha+beta barrel	F: Dabb	ECOD (1.6)
K	Dabb	e5xzqK1	A: a+b two layers	X: Alpha-beta plaits	H: Dimeric alpha+beta barrel (From Topology)	T: Dimeric alpha+beta barrel	F: Dabb	ECOD (1.6)
J	Dabb	e5xzqJ1	A: a+b two layers	X: Alpha-beta plaits	H: Dimeric alpha+beta barrel (From Topology)	T: Dimeric alpha+beta barrel	F: Dabb	ECOD (1.6)
I	Dabb	e5xzqI1	A: a+b two layers	X: Alpha-beta plaits	H: Dimeric alpha+beta barrel (From Topology)	T: Dimeric alpha+beta barrel	F: Dabb	ECOD (1.6)
H	Dabb	e5xzqH1	A: a+b two layers	X: Alpha-beta plaits	H: Dimeric alpha+beta barrel (From Topology)	T: Dimeric alpha+beta barrel	F: Dabb	ECOD (1.6)
G	Dabb	e5xzqG1	A: a+b two layers	X: Alpha-beta plaits	H: Dimeric alpha+beta barrel (From Topology)	T: Dimeric alpha+beta barrel	F: Dabb	ECOD (1.6)
F	Dabb	e5xzqF1	A: a+b two layers	X: Alpha-beta plaits	H: Dimeric alpha+beta barrel (From Topology)	T: Dimeric alpha+beta barrel	F: Dabb	ECOD (1.6)
E	Dabb	e5xzqE1	A: a+b two layers	X: Alpha-beta plaits	H: Dimeric alpha+beta barrel (From Topology)	T: Dimeric alpha+beta barrel	F: Dabb	ECOD (1.6)
D	Dabb	e5xzqD1	A: a+b two layers	X: Alpha-beta plaits	H: Dimeric alpha+beta barrel (From Topology)	T: Dimeric alpha+beta barrel	F: Dabb	ECOD (1.6)
C	Dabb	e5xzqC1	A: a+b two layers	X: Alpha-beta plaits	H: Dimeric alpha+beta barrel (From Topology)	T: Dimeric alpha+beta barrel	F: Dabb	ECOD (1.6)
B	Dabb	e5xzqB1	A: a+b two layers	X: Alpha-beta plaits	H: Dimeric alpha+beta barrel (From Topology)	T: Dimeric alpha+beta barrel	F: Dabb	ECOD (1.6)
A	Dabb	e5xzqA1	A: a+b two layers	X: Alpha-beta plaits	H: Dimeric alpha+beta barrel (From Topology)	T: Dimeric alpha+beta barrel	F: Dabb	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
L	3.30.70.100	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)
K	3.30.70.100	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)
J	3.30.70.100	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)
I	3.30.70.100	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)
H	3.30.70.100	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)
G	3.30.70.100	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)
F	3.30.70.100	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)
E	3.30.70.100	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)
D	3.30.70.100	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)
C	3.30.70.100	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)
B	3.30.70.100	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)
A	3.30.70.100	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF07876	Stress responsive A/B Barrel Domain (Dabb)	Stress responsive A/B Barrel Domain	The function of this family is unknown, but it is upregulated in response to salt stress in Populus balsamifera ([1]). It is also found at the C-terminus of an fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus (Swiss:Q9ZA13; [2]) ...	The function of this family is unknown, but it is upregulated in response to salt stress in Populus balsamifera ([1]). It is also found at the C-terminus of an fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus (Swiss:Q9ZA13; [2]). Swiss:Q93NG5 is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The structure of one has been solved (Swiss:Q9LUV2) and the domain forms an a/b barrel dimer ([3]). Although there is a clear duplication within the domain it is not obviously detectable in the sequence.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Hydroxynitrile lyase	lyase activity catalytic activity	developmental process multi-multicellular organism process multicellular organismal process pollination reproductive process biological process involved in intraspecies interaction between organisms developmental process involved in reproduction pollen tube adhesion cell communication cell adhesion pollen-pistil interaction cell-cell adhesion anatomical structure development cellular process developmental process multi-multicellular organism process multicellular organismal process pollination reproductive process biological process involved in intraspecies interaction between organisms developmental process involved in reproduction pollen tube adhesion cell communication cell adhesion pollen-pistil interaction cell-cell adhesion anatomical structure development cellular process pollen tube development	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR013097	Stress responsive alpha+beta-barrel	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR011008	Dimeric alpha-beta barrel	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR044662	Stress-response A/B barrel domain-containing protein HS1/DABB1-like	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.