5N16 | pdb_00005n16

First Bromodomain (BD1) from Candida albicans Bdf1 bound to a dibenzothiazepinone (compound 1)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d5n16d1	All alpha proteins	Bromodomain-like	Bromodomain	automated matches	automated matches	Yeast (Candida albicans ) [TaxId: 5476 ],	SCOPe (2.08)
D	d5n16d2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Yeast (Candida albicans ) [TaxId: 5476 ],	SCOPe (2.08)
C	d5n16c1	All alpha proteins	Bromodomain-like	Bromodomain	automated matches	automated matches	Yeast (Candida albicans ) [TaxId: 5476 ],	SCOPe (2.08)
C	d5n16c2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Yeast (Candida albicans ) [TaxId: 5476 ],	SCOPe (2.08)
B	d5n16b1	All alpha proteins	Bromodomain-like	Bromodomain	automated matches	automated matches	Yeast (Candida albicans ) [TaxId: 5476 ],	SCOPe (2.08)
B	d5n16b2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Yeast (Candida albicans ) [TaxId: 5476 ],	SCOPe (2.08)
A	d5n16a1	All alpha proteins	Bromodomain-like	Bromodomain	automated matches	automated matches	Yeast (Candida albicans ) [TaxId: 5476 ],	SCOPe (2.08)
A	d5n16a2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Yeast (Candida albicans ) [TaxId: 5476 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	PBP_like_2	e5n16D1	A: alpha bundles	X: Beta domain of coronavirus spike glycoprotein	H: Beta domain of coronavirus spike glycoprotein	T: Beta domain of coronavirus spike glycoprotein	F: PBP_like_2	ECOD (develop294)
C	PBP_like_2	e5n16C1	A: alpha bundles	X: Beta domain of coronavirus spike glycoprotein	H: Beta domain of coronavirus spike glycoprotein	T: Beta domain of coronavirus spike glycoprotein	F: PBP_like_2	ECOD (develop294)
B	PBP_like_2	e5n16B1	A: alpha bundles	X: Beta domain of coronavirus spike glycoprotein	H: Beta domain of coronavirus spike glycoprotein	T: Beta domain of coronavirus spike glycoprotein	F: PBP_like_2	ECOD (develop294)
A	PBP_like_2	e5n16A1	A: alpha bundles	X: Beta domain of coronavirus spike glycoprotein	H: Beta domain of coronavirus spike glycoprotein	T: Beta domain of coronavirus spike glycoprotein	F: PBP_like_2	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	1.20.920.10	Mainly Alpha	Up-down Bundle	Histone Acetyltransferase	Chain A	CATH (4.3.0)
A	1.20.920.10	Mainly Alpha	Up-down Bundle	Histone Acetyltransferase	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF00439	Bromodomain (Bromodomain)	Bromodomain	Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine [3].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Bromodomain-containing factor 1	TFIID-class transcription factor complex binding transcription factor binding basal transcription machinery binding protein-containing complex binding protein binding binding basal RNA polymerase II transcription machinery binding general transcription initiation factor binding RNA polymerase II general transcription initiation factor binding histone reader activity chromatin-protein adaptor activity protein-macromolecule adaptor activity molecular adaptor activity DNA binding TFIID-class transcription factor complex binding transcription factor binding basal transcription machinery binding protein-containing complex binding protein binding binding basal RNA polymerase II transcription machinery binding general transcription initiation factor binding RNA polymerase II general transcription initiation factor binding histone reader activity chromatin-protein adaptor activity protein-macromolecule adaptor activity molecular adaptor activity DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding double-stranded DNA binding core promoter sequence-specific DNA binding nucleic acid binding transcription regulatory region nucleic acid binding	regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of cellular process RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process cellular process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process regulation of cellular component organization negative regulation of heterochromatin formation positive regulation of biological process negative regulation of biological process negative regulation of chromatin organization positive regulation of macromolecule biosynthetic process cellular component organization cellular component biogenesis positive regulation of metabolic process cellular component assembly positive regulation of biosynthetic process chromatin organization negative regulation of cellular process chromatin remodeling positive regulation of macromolecule metabolic process cellular component organization or biogenesis positive regulation of cellular process negative regulation of macromolecule metabolic process regulation of heterochromatin formation heterochromatin formation regulation of chromatin organization negative regulation of cellular component organization epigenetic regulation of gene expression negative regulation of metabolic process heterochromatin organization negative regulation of gene expression positive regulation of gene expression negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process regulation of heterochromatin organization negative regulation of gene expression, epigenetic negative regulation of heterochromatin organization cellular response to stimulus response to stimulus DNA metabolic process cellular response to stress DNA damage response response to stress DNA repair sporulation resulting in formation of a cellular spore developmental process anatomical structure morphogenesis anatomical structure formation involved in morphogenesis anatomical structure development sporulation	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle chromatin chromosome membrane-bounded organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR027353	NET domain	Domain
A, B, C, D	IPR018359	Bromodomain, conserved site	Conserved Site
A, B, C, D	IPR001487	Bromodomain	Domain
A, B, C, D	IPR036427	Bromodomain-like superfamily	Homologous Superfamily
A, B, C, D	IPR050935	Bromodomain-containing chromatin reader	Family
A, B, C, D	IPR038336	NET domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.