5EF3 | pdb_00005ef3

RADIATION DAMAGE TO THE TRAP-RNA COMPLEX: DOSE (DWD) 25.0 MGy

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
V	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
V	TrpBP	e5ef3V1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
U	TrpBP	e5ef3U1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
T	TrpBP	e5ef3T1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
S	TrpBP	e5ef3S1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
R	TrpBP	e5ef3R1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
Q	TrpBP	e5ef3Q1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
P	TrpBP	e5ef3P1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
O	TrpBP	e5ef3O1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
N	TrpBP	e5ef3N1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
M	TrpBP	e5ef3M1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
L	TrpBP	e5ef3L1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
K	TrpBP	e5ef3K1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
J	TrpBP	e5ef3J1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
I	TrpBP	e5ef3I1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
H	TrpBP	e5ef3H1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
G	TrpBP	e5ef3G1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
F	TrpBP	e5ef3F1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
E	TrpBP	e5ef3E1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
D	TrpBP	e5ef3D1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
C	TrpBP	e5ef3C1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
B	TrpBP	e5ef3B1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)
A	TrpBP	e5ef3A1	A: beta sandwiches	X: jelly-roll	H: Trp RNA-binding attenuation protein (TRAP) (From Topology)	T: Trp RNA-binding attenuation protein (TRAP)	F: TrpBP	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
V	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
U	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
T	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
S	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
R	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
Q	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
P	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
O	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
N	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
M	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
L	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
K	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
J	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
I	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
H	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
G	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
F	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
E	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
D	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
C	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
B	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
A	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V	PF02081	Tryptophan RNA-binding attenuator protein (TrpBP)	Tryptophan RNA-binding attenuator protein		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
W	(GAGUU)10GAG 53-NUCLEOTIDE RNA	-	-	-
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V	Transcription attenuation protein MtrB	RNA binding binding nucleic acid binding identical protein binding protein binding	RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression DNA-templated transcription termination macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process cellular process RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression DNA-templated transcription termination macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process regulation of cellular process regulation of primary metabolic process regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation regulation of macromolecule metabolic process regulation of gene expression regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V	IPR016031	Tryptophan RNA-binding attenuator protein-like domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V	IPR000824	Transcription attenuation protein MtrB	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V	IPR023558	Tryptophan RNA-binding attenuator protein domain	Domain