4TOY | pdb_00004toy

Structure of 35O22 Fab, a HIV-1 neutralizing antibody


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
B [auth L]V-sete4toyL1 A: a/b three-layered sandwichesX: beta-GraspH: Ribosomal protein L41-AT: Ribosomal protein L41-AF: V-setECOD (v294.1)
A [auth H]V-sete4toyH1 A: a/b three-layered sandwichesX: beta-GraspH: Ribosomal protein L41-AT: Ribosomal protein L41-AF: V-setECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B [auth L]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
A [auth H]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
B [auth L]35O22 mAb, anti-gp120-gp41 [HIV-1], neutralizing L-LAMBDA Homo sapiens (human) IGLV2-14*02, IGLV2-18*02, IGLV2-23*01, IGLV2-23*02, IGLV2-23*03, IGLJ1*01, IGLC2*01, IGLC2*02, IGLC3*04 V-DOMAIN V-LAMBDA, C-DOMAIN C-LAMBDA IG FAB-GAMMA-1_LAMBDA IMGT (202611-0)
A [auth H]35O22 mAb, anti-gp120-gp41 [HIV-1], neutralizing VH-CH1 Homo sapiens (human) IGHV1-18*01, IGHV1-18*04, IGHJ2*01, IGHG1*03 V-DOMAIN VH, C-DOMAIN CH1 IG FAB-GAMMA-1_LAMBDA IMGT (202611-0)

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
A [auth H]PCA Parent Component: GLN

RESIDAA0031

PSI-MOD :  2-pyrrolidone-5-carboxylic acid (Gln) MOD:00040 , 2-pyrrolidone-5-carboxylic acid (Glu) MOD:00420