Crystal structure analysis of Photosystem II complex
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Membrane Protein Annotation: OPM
- Membrane Protein Annotation: PDBTM
- Membrane Protein Annotation: MemProtMD
- Protein Modification Annotation
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| AA [auth i] | SCOP2B Superfamily | Photosystem II reaction center protein I, PsbI | 8098486 | 3001590 | SCOP2B (2022-06-29) |
| H [auth I] | SCOP2B Superfamily | Photosystem II reaction center protein I, PsbI | 8098486 | 3001590 | SCOP2B (2022-06-29) |
| EA [auth m] | SCOP2B Superfamily | Photosystem II reaction center protein M, PsbM | 8087180 | 3001573 | SCOP2B (2022-06-29) |
| L [auth M] | SCOP2B Superfamily | Photosystem II reaction center protein M, PsbM | 8087180 | 3001573 | SCOP2B (2022-06-29) |
| I [auth J] | SCOP2B Superfamily | Photosystem II reaction center protein J, PsbJ | 8099970 | 3001534 | SCOP2B (2022-06-29) |
| BA [auth j] | SCOP2B Superfamily | Photosystem II reaction center protein J, PsbJ | 8099970 | 3001534 | SCOP2B (2022-06-29) |
| G [auth H] | SCOP2B Superfamily | Photosystem II 10 kDa phosphoprotein PsbH | 8098552 | 3001547 | SCOP2B (2022-06-29) |
| Z [auth h] | SCOP2B Superfamily | Photosystem II 10 kDa phosphoprotein PsbH | 8098552 | 3001547 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | Cytochrome b559 subunits | 8098484 | 3001602 | SCOP2B (2022-06-29) |
| Y [auth f] | SCOP2B Superfamily | Cytochrome b559 subunits | 8098484 | 3001602 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | Cytochrome b559 subunits | 8098482 | 3001602 | SCOP2B (2022-06-29) |
| X [auth e] | SCOP2B Superfamily | Cytochrome b559 subunits | 8098482 | 3001602 | SCOP2B (2022-06-29) |
| W [auth d] | SCOP2B Superfamily | Bacterial photosystem II reaction centre, L and M subunits | 8097554 | 3000736 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | Bacterial photosystem II reaction centre, L and M subunits | 8097554 | 3000736 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | Photosystem II antenna protein-like | 8097552 | 3001674 | SCOP2B (2022-06-29) |
| V [auth c] | SCOP2B Superfamily | Photosystem II antenna protein-like | 8097552 | 3001674 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Photosystem II antenna protein-like | 8097548 | 3001674 | SCOP2B (2022-06-29) |
| U [auth b] | SCOP2B Superfamily | Photosystem II antenna protein-like | 8097548 | 3001674 | SCOP2B (2022-06-29) |
| S [auth Z] | SCOP2B Superfamily | PsbZ-like | 8093510 | 3001624 | SCOP2B (2022-06-29) |
| LA [auth z] | SCOP2B Superfamily | PsbZ-like | 8093510 | 3001624 | SCOP2B (2022-06-29) |
| JA [auth y] | SCOP2B Superfamily | Photosystem II reaction center protein Ycf12 | 8093135 | 3002680 | SCOP2B (2022-06-29) |
| Q [auth Y] | SCOP2 Family | Photosystem II reaction center protein Ycf12 | 8047733 | 4005791 | SCOP2 (2022-06-29) |
| Q [auth Y] | SCOP2 Superfamily | Photosystem II reaction center protein Ycf12 | 8093135 | 3002680 | SCOP2 (2022-06-29) |
| GA [auth t] | SCOP2B Superfamily | Photosystem II reaction center protein T, PsbT | 8101519 | 3001561 | SCOP2B (2022-06-29) |
| N [auth T] | SCOP2B Superfamily | Photosystem II reaction center protein T, PsbT | 8101519 | 3001561 | SCOP2B (2022-06-29) |
| FA [auth o] | SCOP2B Superfamily | OMPA barrel-like | 8097550 | 3000208 | SCOP2B (2022-06-29) |
| M [auth O] | SCOP2B Superfamily | OMPA barrel-like | 8097550 | 3000208 | SCOP2B (2022-06-29) |
| DA [auth l] | SCOP2B Superfamily | Photosystem II reaction center protein L, PsbL | 8093612 | 3001523 | SCOP2B (2022-06-29) |
| K [auth L] | SCOP2B Superfamily | Photosystem II reaction center protein L, PsbL | 8093612 | 3001523 | SCOP2B (2022-06-29) |
| J [auth K] | SCOP2B Superfamily | Photosystem II reaction center protein K, PsbK | 8088607 | 3001585 | SCOP2B (2022-06-29) |
| CA [auth k] | SCOP2B Superfamily | Photosystem II reaction center protein K, PsbK | 8088607 | 3001585 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| AA [auth i] | e3wu2i1 | A: Ribosomal protein L41-A | X: Ribosomal protein L41-A | H: Ribosomal protein L41-A | T: IL8 | F: | ECOD (20:10:01) | |
| H [auth I] | e3wu2I1 | A: Ribosomal protein L41-A | X: Ribosomal protein L41-A | H: Ribosomal protein L41-A | T: IL8 | F: | ECOD (20:10:01) | |
| EA [auth m] | e3wu2m1 | A: Ribosomal protein L41-A | X: Ribosomal protein L41-A | H: Ribosomal protein L41-A | T: IL8 | F: | ECOD (20:10:01) | |
| L [auth M] | e3wu2M1 | A: Ribosomal protein L41-A | X: Ribosomal protein L41-A | H: Ribosomal protein L41-A | T: IL8 | F: | ECOD (20:10:01) | |
| HA [auth u] | e3wu2u1 | A: Ribosomal protein L41-A | X: Ribosomal protein L41-A | H: Ribosomal protein L41-A | T: IL8 | F: | ECOD (20:10:01) | |
| O [auth U] | e3wu2U1 | A: Ribosomal protein L41-A | X: Ribosomal protein L41-A | H: Ribosomal protein L41-A | T: IL8 | F: | ECOD (20:10:01) | |
| KA [auth x] | e3wu2x1 | A: Ribosomal protein L41-A | X: Ribosomal protein L41-A | H: Ribosomal protein L41-A | T: IL8 | F: | ECOD (20:10:01) | |
| R [auth X] | e3wu2X1 | A: Ribosomal protein L41-A | X: Ribosomal protein L41-A | H: Ribosomal protein L41-A | T: IL8 | F: | ECOD (20:10:01) | |
| I [auth J] | e3wu2J1 | A: Ribosomal protein L41-A | X: Ribosomal protein L41-A | H: Ribosomal protein L41-A | T: IL8 | F: | ECOD (20:10:01) | |
| BA [auth j] | e3wu2j1 | A: Ribosomal protein L41-A | X: Ribosomal protein L41-A | H: Ribosomal protein L41-A | T: IL8 | F: | ECOD (20:10:01) | |
| G [auth H] | e3wu2H1 | A: Ribosomal protein L41-A | X: Ribosomal protein L41-A | H: Ribosomal protein L41-A | T: IL8 | F: | ECOD (20:10:01) | |
| Z [auth h] | e3wu2h1 | A: Ribosomal protein L41-A | X: Ribosomal protein L41-A | H: Ribosomal protein L41-A | T: IL8 | F: | ECOD (20:10:01) | |
| F | e3wu2F1 | A: Ribosomal protein L41-A | X: Ribosomal protein L41-A | H: Ribosomal protein L41-A | T: IL8 | F: | ECOD (20:10:01) | |
| Y [auth f] | e3wu2f1 | A: Ribosomal protein L41-A | X: Ribosomal protein L41-A | H: Ribosomal protein L41-A | T: IL8 | F: | ECOD (20:10:01) | |
| E | e3wu2E1 | A: Ribosomal protein L41-A | X: Ribosomal protein L41-A | H: Ribosomal protein L41-A | T: IL8 | F: | ECOD (20:10:01) | |
| X [auth e] | e3wu2e1 | A: Ribosomal protein L41-A | X: Ribosomal protein L41-A | H: Ribosomal protein L41-A | T: IL8 | F: | ECOD (20:10:01) | |
| W [auth d] | e3wu2d1 | A: Ribosomal protein L41-A | X: Ribosomal protein L41-A | H: Ribosomal protein L41-A | T: IL8 | F: | ECOD (20:10:01) | |
| D | e3wu2D1 | A: Ribosomal protein L41-A | X: Ribosomal protein L41-A | H: Ribosomal protein L41-A | T: IL8 | F: | ECOD (20:10:01) | |
| C | e3wu2C1 | A: Ribosomal protein L41-A | X: Ribosomal protein L41-A | H: Ribosomal protein L41-A | T: IL8 | F: | ECOD (20:10:01) | |
| V [auth c] | e3wu2c1 | A: Ribosomal protein L41-A | X: Ribosomal protein L41-A | H: Ribosomal protein L41-A | T: IL8 | F: | ECOD (20:10:01) | |
| B | e3wu2B1 | A: Ribosomal protein L41-A | X: Ribosomal protein L41-A | H: Ribosomal protein L41-A | T: IL8 | F: | ECOD (20:10:01) | |
| U [auth b] | e3wu2b1 | A: Ribosomal protein L41-A | X: Ribosomal protein L41-A | H: Ribosomal protein L41-A | T: IL8 | F: | ECOD (20:10:01) | |
| S [auth Z] | e3wu2Z1 | A: Ribosomal protein L41-A | X: Ribosomal protein L41-A | H: Ribosomal protein L41-A | T: IL8 | F: | ECOD (20:10:01) | |
| LA [auth z] | e3wu2z1 | A: Ribosomal protein L41-A | X: Ribosomal protein L41-A | H: Ribosomal protein L41-A | T: IL8 | F: | ECOD (20:10:01) | |
| JA [auth y] | e3wu2y1 | A: Ribosomal protein L41-A | X: Ribosomal protein L41-A | H: Ribosomal protein L41-A | T: IL8 | F: | ECOD (20:10:01) | |
| Q [auth Y] | e3wu2Y1 | A: Ribosomal protein L41-A | X: Ribosomal protein L41-A | H: Ribosomal protein L41-A | T: IL8 | F: | ECOD (20:10:01) | |
| IA [auth v] | e3wu2v1 | A: Ribosomal protein L41-A | X: Ribosomal protein L41-A | H: Ribosomal protein L41-A | T: IL8 | F: | ECOD (20:10:01) | |
| P [auth V] | e3wu2V1 | A: Ribosomal protein L41-A | X: Ribosomal protein L41-A | H: Ribosomal protein L41-A | T: IL8 | F: | ECOD (20:10:01) | |
| GA [auth t] | e3wu2t1 | A: Ribosomal protein L41-A | X: Ribosomal protein L41-A | H: Ribosomal protein L41-A | T: IL8 | F: | ECOD (20:10:01) | |
| N [auth T] | e3wu2T1 | A: Ribosomal protein L41-A | X: Ribosomal protein L41-A | H: Ribosomal protein L41-A | T: IL8 | F: | ECOD (20:10:01) | |
| FA [auth o] | e3wu2o1 | A: Ribosomal protein L41-A | X: Ribosomal protein L41-A | H: Ribosomal protein L41-A | T: IL8 | F: | ECOD (20:10:01) | |
| M [auth O] | e3wu2O1 | A: Ribosomal protein L41-A | X: Ribosomal protein L41-A | H: Ribosomal protein L41-A | T: IL8 | F: | ECOD (20:10:01) | |
| DA [auth l] | e3wu2l1 | A: Ribosomal protein L41-A | X: Ribosomal protein L41-A | H: Ribosomal protein L41-A | T: IL8 | F: | ECOD (20:10:01) | |
| K [auth L] | e3wu2L1 | A: Ribosomal protein L41-A | X: Ribosomal protein L41-A | H: Ribosomal protein L41-A | T: IL8 | F: | ECOD (20:10:01) | |
| J [auth K] | e3wu2K1 | A: Ribosomal protein L41-A | X: Ribosomal protein L41-A | H: Ribosomal protein L41-A | T: IL8 | F: | ECOD (20:10:01) | |
| CA [auth k] | e3wu2k1 | A: Ribosomal protein L41-A | X: Ribosomal protein L41-A | H: Ribosomal protein L41-A | T: IL8 | F: | ECOD (20:10:01) | |
| T [auth a] | e3wu2a1 | A: Ribosomal protein L41-A | X: Ribosomal protein L41-A | H: Ribosomal protein L41-A | T: IL8 | F: | ECOD (20:10:01) | |
| A | e3wu2A1 | A: Ribosomal protein L41-A | X: Ribosomal protein L41-A | H: Ribosomal protein L41-A | T: IL8 | F: | ECOD (20:10:01) |
Domain Annotation: CATH CATH Database Homepage
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Membrane Protein Annotation: OPM OPM Database Homepage
| Chains | External Link | Type | Class | Superfamily | Family |
|---|---|---|---|---|---|
| OPM | Transmembrane | Alpha-helical polytopic | Photosystems | Photosystem II |
Membrane Protein Annotation: PDBTM PDBTM Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| PDBTM | Annotated as membrane protein by PDBTM |
Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage
| Chains | External Link | Comment |
|---|---|---|
| MemProtMD | Annotated as membrane protein by MemProtMD |
Protein Modification Annotation
| Modified Residue(s) | ||
|---|---|---|
| Chain | Residue(s) | Description |
| AA [auth i], H [auth I] | FME | Parent Component: MET :  AA0021 , AA0566 :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 |
| EA [auth m], L [auth M] | FME | Parent Component: MET :  AA0021 , AA0566 , AA0021 , AA0566 :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 , N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 |
| D, W [auth d] | HSK | Parent Component: HIS :  AA0021 , AA0566 , AA0021 , AA0566 |
| GA [auth t], N [auth T] | FME | Parent Component: MET :  AA0021 , AA0566 , AA0021 , AA0566 , AA0021 , AA0566 :  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 , N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 , N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 |














