2IGO | pdb_00002igo

Crystal structure of pyranose 2-oxidase H167A mutant with 2-fluoro-2-deoxy-D-glucose

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d2igoa1	Alpha and beta proteins (a/b)	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	FAD-linked reductases, N-terminal domain	Pyranose 2-oxidase	(Trametes ochracea ) [TaxId: 230624 ],	SCOPe (2.08)
A	d2igoa2	Alpha and beta proteins (a+b)	FAD-linked reductases, C-terminal domain	FAD-linked reductases, C-terminal domain	GMC oxidoreductases	Pyranose 2-oxidase	(Trametes ochracea ) [TaxId: 230624 ],	SCOPe (2.08)
B	d2igob1	Alpha and beta proteins (a/b)	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	FAD-linked reductases, N-terminal domain	Pyranose 2-oxidase	(Trametes ochracea ) [TaxId: 230624 ],	SCOPe (2.08)
B	d2igob2	Alpha and beta proteins (a+b)	FAD-linked reductases, C-terminal domain	FAD-linked reductases, C-terminal domain	GMC oxidoreductases	Pyranose 2-oxidase	(Trametes ochracea ) [TaxId: 230624 ],	SCOPe (2.08)
C [auth D]	d2igod1	Alpha and beta proteins (a/b)	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	FAD-linked reductases, N-terminal domain	Pyranose 2-oxidase	(Trametes ochracea ) [TaxId: 230624 ],	SCOPe (2.08)
C [auth D]	d2igod2	Alpha and beta proteins (a+b)	FAD-linked reductases, C-terminal domain	FAD-linked reductases, C-terminal domain	GMC oxidoreductases	Pyranose 2-oxidase	(Trametes ochracea ) [TaxId: 230624 ],	SCOPe (2.08)
E	d2igoe1	Alpha and beta proteins (a/b)	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	FAD-linked reductases, N-terminal domain	Pyranose 2-oxidase	(Trametes ochracea ) [TaxId: 230624 ],	SCOPe (2.08)
E	d2igoe2	Alpha and beta proteins (a+b)	FAD-linked reductases, C-terminal domain	FAD-linked reductases, C-terminal domain	GMC oxidoreductases	Pyranose 2-oxidase	(Trametes ochracea ) [TaxId: 230624 ],	SCOPe (2.08)
F	d2igof1	Alpha and beta proteins (a/b)	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	FAD-linked reductases, N-terminal domain	Pyranose 2-oxidase	(Trametes ochracea ) [TaxId: 230624 ],	SCOPe (2.08)
F	d2igof2	Alpha and beta proteins (a+b)	FAD-linked reductases, C-terminal domain	FAD-linked reductases, C-terminal domain	GMC oxidoreductases	Pyranose 2-oxidase	(Trametes ochracea ) [TaxId: 230624 ],	SCOPe (2.08)
G [auth H]	d2igoh1	Alpha and beta proteins (a/b)	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	FAD-linked reductases, N-terminal domain	Pyranose 2-oxidase	(Trametes ochracea ) [TaxId: 230624 ],	SCOPe (2.08)
G [auth H]	d2igoh2	Alpha and beta proteins (a+b)	FAD-linked reductases, C-terminal domain	FAD-linked reductases, C-terminal domain	GMC oxidoreductases	Pyranose 2-oxidase	(Trametes ochracea ) [TaxId: 230624 ],	SCOPe (2.08)
H [auth G]	d2igog1	Alpha and beta proteins (a/b)	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	FAD-linked reductases, N-terminal domain	Pyranose 2-oxidase	(Trametes ochracea ) [TaxId: 230624 ],	SCOPe (2.08)
H [auth G]	d2igog2	Alpha and beta proteins (a+b)	FAD-linked reductases, C-terminal domain	FAD-linked reductases, C-terminal domain	GMC oxidoreductases	Pyranose 2-oxidase	(Trametes ochracea ) [TaxId: 230624 ],	SCOPe (2.08)
D [auth C]	d2igoc1	Alpha and beta proteins (a/b)	FAD/NAD(P)-binding domain	FAD/NAD(P)-binding domain	FAD-linked reductases, N-terminal domain	Pyranose 2-oxidase	(Trametes ochracea ) [TaxId: 230624 ],	SCOPe (2.08)
D [auth C]	d2igoc2	Alpha and beta proteins (a+b)	FAD-linked reductases, C-terminal domain	FAD-linked reductases, C-terminal domain	GMC oxidoreductases	Pyranose 2-oxidase	(Trametes ochracea ) [TaxId: 230624 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	pyranose_ox	e2igoA1	A: a+b two layers	X: FAD-linked reductases, C-terminal domain-like	H: FAD-linked reductases-C (From Topology)	T: FAD-linked reductases-C	F: pyranose_ox	ECOD (1.6)
A	GMC_oxred_N	e2igoA2	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: GMC_oxred_N	ECOD (1.6)
B	pyranose_ox	e2igoB1	A: a+b two layers	X: FAD-linked reductases, C-terminal domain-like	H: FAD-linked reductases-C (From Topology)	T: FAD-linked reductases-C	F: pyranose_ox	ECOD (1.6)
B	GMC_oxred_N	e2igoB2	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: GMC_oxred_N	ECOD (1.6)
C [auth D]	pyranose_ox	e2igoD1	A: a+b two layers	X: FAD-linked reductases, C-terminal domain-like	H: FAD-linked reductases-C (From Topology)	T: FAD-linked reductases-C	F: pyranose_ox	ECOD (1.6)
C [auth D]	GMC_oxred_N	e2igoD2	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: GMC_oxred_N	ECOD (1.6)
E	pyranose_ox	e2igoE1	A: a+b two layers	X: FAD-linked reductases, C-terminal domain-like	H: FAD-linked reductases-C (From Topology)	T: FAD-linked reductases-C	F: pyranose_ox	ECOD (1.6)
E	GMC_oxred_N	e2igoE2	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: GMC_oxred_N	ECOD (1.6)
F	pyranose_ox	e2igoF1	A: a+b two layers	X: FAD-linked reductases, C-terminal domain-like	H: FAD-linked reductases-C (From Topology)	T: FAD-linked reductases-C	F: pyranose_ox	ECOD (1.6)
F	GMC_oxred_N	e2igoF2	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: GMC_oxred_N	ECOD (1.6)
G [auth H]	pyranose_ox	e2igoH1	A: a+b two layers	X: FAD-linked reductases, C-terminal domain-like	H: FAD-linked reductases-C (From Topology)	T: FAD-linked reductases-C	F: pyranose_ox	ECOD (1.6)
G [auth H]	GMC_oxred_N	e2igoH2	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: GMC_oxred_N	ECOD (1.6)
H [auth G]	pyranose_ox	e2igoG1	A: a+b two layers	X: FAD-linked reductases, C-terminal domain-like	H: FAD-linked reductases-C (From Topology)	T: FAD-linked reductases-C	F: pyranose_ox	ECOD (1.6)
H [auth G]	GMC_oxred_N	e2igoG2	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: GMC_oxred_N	ECOD (1.6)
D [auth C]	pyranose_ox	e2igoC1	A: a+b two layers	X: FAD-linked reductases, C-terminal domain-like	H: FAD-linked reductases-C (From Topology)	T: FAD-linked reductases-C	F: pyranose_ox	ECOD (1.6)
D [auth C]	GMC_oxred_N	e2igoC2	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: FAD/NAD(P)-binding domain	F: GMC_oxred_N	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.1920.50	Alpha Beta	2-Layer Sandwich	Phage tail proteins - 2 layer sandwich fold		CATH (4.3.0)
B	3.30.1920.50	Alpha Beta	2-Layer Sandwich	Phage tail proteins - 2 layer sandwich fold		CATH (4.3.0)
C [auth D]	3.30.1920.50	Alpha Beta	2-Layer Sandwich	Phage tail proteins - 2 layer sandwich fold		CATH (4.3.0)
E	3.30.1920.50	Alpha Beta	2-Layer Sandwich	Phage tail proteins - 2 layer sandwich fold		CATH (4.3.0)
F	3.30.1920.50	Alpha Beta	2-Layer Sandwich	Phage tail proteins - 2 layer sandwich fold		CATH (4.3.0)
G [auth H]	3.30.1920.50	Alpha Beta	2-Layer Sandwich	Phage tail proteins - 2 layer sandwich fold		CATH (4.3.0)
H [auth G]	3.30.1920.50	Alpha Beta	2-Layer Sandwich	Phage tail proteins - 2 layer sandwich fold		CATH (4.3.0)
D [auth C]	3.30.1920.50	Alpha Beta	2-Layer Sandwich	Phage tail proteins - 2 layer sandwich fold		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C [auth D], D [auth C], E, A, B, C [auth D], D [auth C], E, F, G [auth H], H [auth G]	PF05199	GMC oxidoreductase (GMC_oxred_C)	GMC oxidoreductase	This domain found associated with Pfam:PF00732.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C [auth D], D [auth C], E, A, B, C [auth D], D [auth C], E, F, G [auth H], H [auth G]	Pyranose oxidase	oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor oxidoreductase activity oxidoreductase activity, acting on CH-OH group of donors pyranose oxidase activity catalytic activity flavin adenine dinucleotide binding binding nucleoside phosphate binding ion binding anion binding nucleotide binding heterocyclic compound binding small molecule binding	-	cellular anatomical structure periplasmic space

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C [auth D], D [auth C], E, A, B, C [auth D], D [auth C], E, F, G [auth H], H [auth G]	IPR012814	Pyranose 2-oxidase	Family
A, B, C [auth D], D [auth C], E, A, B, C [auth D], D [auth C], E, F, G [auth H], H [auth G]	IPR007867	Glucose-methanol-choline oxidoreductase, C-terminal	Domain
A, B, C [auth D], D [auth C], E, A, B, C [auth D], D [auth C], E, F, G [auth H], H [auth G]	IPR036188	FAD/NAD(P)-binding domain superfamily	Homologous Superfamily
A, B, C [auth D], D [auth C], E, A, B, C [auth D], D [auth C], E, F, G [auth H], H [auth G]	IPR051473	Pyranose 2-oxidase-like	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.