2HJR | pdb_00002hjr

Crystal Structure of Cryptosporidium parvum malate dehydrogenase

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad2hjra1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains automated matches automated matches (Cryptosporidium parvum ) [TaxId: 5807 ], SCOPe (2.08)
Ad2hjra2 Alpha and beta proteins (a+b) LDH C-terminal domain-like LDH C-terminal domain-like automated matches automated matches (Cryptosporidium parvum ) [TaxId: 5807 ], SCOPe (2.08)
Bd2hjrb1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains automated matches automated matches (Cryptosporidium parvum ) [TaxId: 5807 ], SCOPe (2.08)
Bd2hjrb2 Alpha and beta proteins (a+b) LDH C-terminal domain-like LDH C-terminal domain-like automated matches automated matches (Cryptosporidium parvum ) [TaxId: 5807 ], SCOPe (2.08)
Cd2hjrc1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains automated matches automated matches (Cryptosporidium parvum ) [TaxId: 5807 ], SCOPe (2.08)
Cd2hjrc2 Alpha and beta proteins (a+b) LDH C-terminal domain-like LDH C-terminal domain-like automated matches automated matches (Cryptosporidium parvum ) [TaxId: 5807 ], SCOPe (2.08)
Dd2hjrd1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains automated matches automated matches (Cryptosporidium parvum ) [TaxId: 5807 ], SCOPe (2.08)
Dd2hjrd2 Alpha and beta proteins (a+b) LDH C-terminal domain-like LDH C-terminal domain-like automated matches automated matches (Cryptosporidium parvum ) [TaxId: 5807 ], SCOPe (2.08)
Ed2hjre1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains automated matches automated matches (Cryptosporidium parvum ) [TaxId: 5807 ], SCOPe (2.08)
Ed2hjre2 Alpha and beta proteins (a+b) LDH C-terminal domain-like LDH C-terminal domain-like automated matches automated matches (Cryptosporidium parvum ) [TaxId: 5807 ], SCOPe (2.08)
Fd2hjrf1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains automated matches automated matches (Cryptosporidium parvum ) [TaxId: 5807 ], SCOPe (2.08)
Fd2hjrf2 Alpha and beta proteins (a+b) LDH C-terminal domain-like LDH C-terminal domain-like automated matches automated matches (Cryptosporidium parvum ) [TaxId: 5807 ], SCOPe (2.08)
Gd2hjrg1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains automated matches automated matches (Cryptosporidium parvum ) [TaxId: 5807 ], SCOPe (2.08)
Gd2hjrg2 Alpha and beta proteins (a+b) LDH C-terminal domain-like LDH C-terminal domain-like automated matches automated matches (Cryptosporidium parvum ) [TaxId: 5807 ], SCOPe (2.08)
Hd2hjrh1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains automated matches automated matches (Cryptosporidium parvum ) [TaxId: 5807 ], SCOPe (2.08)
Hd2hjrh2 Alpha and beta proteins (a+b) LDH C-terminal domain-like LDH C-terminal domain-like automated matches automated matches (Cryptosporidium parvum ) [TaxId: 5807 ], SCOPe (2.08)
Id2hjri1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains automated matches automated matches (Cryptosporidium parvum ) [TaxId: 5807 ], SCOPe (2.08)
Id2hjri2 Alpha and beta proteins (a+b) LDH C-terminal domain-like LDH C-terminal domain-like automated matches automated matches (Cryptosporidium parvum ) [TaxId: 5807 ], SCOPe (2.08)
Jd2hjrj1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains automated matches automated matches (Cryptosporidium parvum ) [TaxId: 5807 ], SCOPe (2.08)
Jd2hjrj2 Alpha and beta proteins (a+b) LDH C-terminal domain-like LDH C-terminal domain-like automated matches automated matches (Cryptosporidium parvum ) [TaxId: 5807 ], SCOPe (2.08)
Kd2hjrk1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains automated matches automated matches (Cryptosporidium parvum ) [TaxId: 5807 ], SCOPe (2.08)
Kd2hjrk2 Alpha and beta proteins (a+b) LDH C-terminal domain-like LDH C-terminal domain-like automated matches automated matches (Cryptosporidium parvum ) [TaxId: 5807 ], SCOPe (2.08)
Ld2hjrl1 Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains automated matches automated matches (Cryptosporidium parvum ) [TaxId: 5807 ], SCOPe (2.08)
Ld2hjrl2 Alpha and beta proteins (a+b) LDH C-terminal domain-like LDH C-terminal domain-like automated matches automated matches (Cryptosporidium parvum ) [TaxId: 5807 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyLDH/MDH-like 8059743 4000045 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyLDH/MDH/AglA-like 8059744 3000039 SCOP2 (2022-06-29)
BSCOP2B SuperfamilyLDH/MDH/AglA-like 8059744 3000039 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyLDH/MDH/AglA-like 8059744 3000039 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyLDH/MDH/AglA-like 8059744 3000039 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyLDH/MDH/AglA-like 8059744 3000039 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyLDH/MDH/AglA-like 8059744 3000039 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyLDH/MDH/AglA-like 8059744 3000039 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyLDH/MDH/AglA-like 8059744 3000039 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyLDH/MDH/AglA-like 8059744 3000039 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyLDH/MDH/AglA-like 8059744 3000039 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyLDH/MDH/AglA-like 8059744 3000039 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyLDH/MDH/AglA-like 8059744 3000039 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Ae2hjrA2 A: Globin-likeX: Globin-likeH: Globin-likeT: Ldh_1_NF:ECOD (20:10:01)
Ae2hjrA3 A: MocoBD/DmpA-relatedX: MocoBD/DmpA-relatedH: Retrovirus capsid protein-CT: Ldh_1_CF:ECOD (20:10:01)
Be2hjrB2 A: HTHX: HTHH: winged helix domainT: MarRF:ECOD (20:10:01)
Be2hjrB3 A: MocoBD/DmpA-relatedX: MocoBD/DmpA-relatedH: Retrovirus capsid protein-CT: Ldh_1_CF:ECOD (20:10:01)
Ce2hjrC2 A: HTHX: HTHH: winged helix domainT: MarRF:ECOD (20:10:01)
Ce2hjrC3 A: MocoBD/DmpA-relatedX: MocoBD/DmpA-relatedH: Retrovirus capsid protein-CT: Ldh_1_CF:ECOD (20:10:01)
De2hjrD2 A: HTHX: HTHH: winged helix domainT: MarRF:ECOD (20:10:01)
De2hjrD3 A: MocoBD/DmpA-relatedX: MocoBD/DmpA-relatedH: Retrovirus capsid protein-CT: Ldh_1_CF:ECOD (20:10:01)
Ee2hjrE2 A: HTHX: HTHH: winged helix domainT: MarRF:ECOD (20:10:01)
Ee2hjrE3 A: MocoBD/DmpA-relatedX: MocoBD/DmpA-relatedH: Retrovirus capsid protein-CT: Ldh_1_CF:ECOD (20:10:01)
Fe2hjrF2 A: HTHX: HTHH: winged helix domainT: MarRF:ECOD (20:10:01)
Fe2hjrF3 A: MocoBD/DmpA-relatedX: MocoBD/DmpA-relatedH: Retrovirus capsid protein-CT: Ldh_1_CF:ECOD (20:10:01)
Ge2hjrG2 A: HTHX: HTHH: winged helix domainT: MarRF:ECOD (20:10:01)
Ge2hjrG3 A: MocoBD/DmpA-relatedX: MocoBD/DmpA-relatedH: Retrovirus capsid protein-CT: Ldh_1_CF:ECOD (20:10:01)
He2hjrH2 A: HTHX: HTHH: winged helix domainT: MarRF:ECOD (20:10:01)
He2hjrH3 A: MocoBD/DmpA-relatedX: MocoBD/DmpA-relatedH: Retrovirus capsid protein-CT: Ldh_1_CF:ECOD (20:10:01)
Ie2hjrI2 A: HTHX: HTHH: winged helix domainT: MarRF:ECOD (20:10:01)
Ie2hjrI3 A: MocoBD/DmpA-relatedX: MocoBD/DmpA-relatedH: Retrovirus capsid protein-CT: Ldh_1_CF:ECOD (20:10:01)
Je2hjrJ2 A: HTHX: HTHH: winged helix domainT: MarRF:ECOD (20:10:01)
Je2hjrJ3 A: MocoBD/DmpA-relatedX: MocoBD/DmpA-relatedH: Retrovirus capsid protein-CT: Ldh_1_CF:ECOD (20:10:01)
Ke2hjrK2 A: HTHX: HTHH: winged helix domainT: MarRF:ECOD (20:10:01)
Ke2hjrK3 A: MocoBD/DmpA-relatedX: MocoBD/DmpA-relatedH: Retrovirus capsid protein-CT: Ldh_1_CF:ECOD (20:10:01)
Le2hjrL2 A: HTHX: HTHH: winged helix domainT: MarRF:ECOD (20:10:01)
Le2hjrL3 A: MocoBD/DmpA-relatedX: MocoBD/DmpA-relatedH: Retrovirus capsid protein-CT: Ldh_1_CF:ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
A3.90.110.10 Alpha Beta Alpha-Beta Complex L-2-Hydroxyisocaproate Dehydrogenase Chain A, domain 2CATH (4.3.0)
B3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
B3.90.110.10 Alpha Beta Alpha-Beta Complex L-2-Hydroxyisocaproate Dehydrogenase Chain A, domain 2CATH (4.3.0)
C3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
C3.90.110.10 Alpha Beta Alpha-Beta Complex L-2-Hydroxyisocaproate Dehydrogenase Chain A, domain 2CATH (4.3.0)
D3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
D3.90.110.10 Alpha Beta Alpha-Beta Complex L-2-Hydroxyisocaproate Dehydrogenase Chain A, domain 2CATH (4.3.0)
E3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
E3.90.110.10 Alpha Beta Alpha-Beta Complex L-2-Hydroxyisocaproate Dehydrogenase Chain A, domain 2CATH (4.3.0)
F3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
F3.90.110.10 Alpha Beta Alpha-Beta Complex L-2-Hydroxyisocaproate Dehydrogenase Chain A, domain 2CATH (4.3.0)
G3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
G3.90.110.10 Alpha Beta Alpha-Beta Complex L-2-Hydroxyisocaproate Dehydrogenase Chain A, domain 2CATH (4.3.0)
H3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
H3.90.110.10 Alpha Beta Alpha-Beta Complex L-2-Hydroxyisocaproate Dehydrogenase Chain A, domain 2CATH (4.3.0)
I3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
I3.90.110.10 Alpha Beta Alpha-Beta Complex L-2-Hydroxyisocaproate Dehydrogenase Chain A, domain 2CATH (4.3.0)
J3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
J3.90.110.10 Alpha Beta Alpha-Beta Complex L-2-Hydroxyisocaproate Dehydrogenase Chain A, domain 2CATH (4.3.0)
K3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
K3.90.110.10 Alpha Beta Alpha-Beta Complex L-2-Hydroxyisocaproate Dehydrogenase Chain A, domain 2CATH (4.3.0)
L3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
L3.90.110.10 Alpha Beta Alpha-Beta Complex L-2-Hydroxyisocaproate Dehydrogenase Chain A, domain 2CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF02866lactate/malate dehydrogenase, alpha/beta C-terminal domain (Ldh_1_C)lactate/malate dehydrogenase, alpha/beta C-terminal domainL-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the in ...L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes.
Domain
A, B, C, D, E
PF00056lactate/malate dehydrogenase, NAD binding domain (Ldh_1_N)lactate/malate dehydrogenase, NAD binding domainL-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the in ...L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate. The enzyme participates in the citric acid cycle. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. N-terminus (this family) is a Rossmann NAD-binding fold. C-terminus is an unusual alpha+beta fold.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
Malate dehydrogenase -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR001236Lactate/malate dehydrogenase, N-terminalDomain
A, B, C, D, E
IPR036291NAD(P)-binding domain superfamilyHomologous Superfamily
A, B, C, D, E
IPR011275Malate dehydrogenase, type 3Family
A, B, C, D, E
IPR015955Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminalHomologous Superfamily
A, B, C, D, E
IPR022383Lactate/malate dehydrogenase, C-terminalDomain
A, B, C, D, E
IPR001557L-lactate/malate dehydrogenaseFamily