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 21WG | pdb_000021wg

In situ structure of the mixed trans-lumenal/trans-stromal and side-by-side PSII-LHCII tetramer (TL-TS-SS tetramer) from Oryza sativa


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
PF01716Manganese-stabilising protein / photosystem II polypeptide (MSP)Manganese-stabilising protein / photosystem II polypeptide- Family
PF01789PsbP (PsbP)PsbPThis entry consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria (known as CyanoP). The 23 KDa PsbP protein is required for PSII to be ful ...This entry consists of the 23 kDa subunit of oxygen evolving system of photosystem II or PsbP from various plants (where it is encoded by the nuclear genome) and Cyanobacteria (known as CyanoP). The 23 KDa PsbP protein is required for PSII to be fully operational in vivo, it increases the affinity of the water oxidation site for Cl- and provides the conditions required for high affinity binding of Ca2+ [2]. Structure of CyanoP from Synechocystis sp. revealed that it has an alpha-beta-alpha fold containing 10 beta strands organized into two anti-parallel beta-sheets, packed against alpha-helices. This entry covers the first seven beta-stands (beta1-beta7) and the N-terminal alpha-helix [1].
Domain
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
PF00504Chlorophyll A-B binding protein (Chloroa_b-bind)Chlorophyll A-B binding protein- Family
PF04725Photosystem II 10 kDa polypeptide PsbR (PsbR)Photosystem II 10 kDa polypeptide PsbR- Family
PF07123Photosystem II reaction centre W protein (PsbW) (PsbW)Photosystem II reaction centre W protein (PsbW)- Family
PF06298Photosystem II protein Y (PsbY) (PsbY)Photosystem II protein Y (PsbY)- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Chlorophyll a-b binding protein 2, chloroplastic-
Chlorophyll a/b-binding protein- - -
Chlorophyll a-b binding protein, chloroplastic-
Photosystem II protein D1
Photosystem II CP47 reaction center protein
Photosystem II CP43 reaction center protein
Photosystem II D2 protein
Cytochrome b559 subunit alpha
Cytochrome b559 subunit beta
Photosystem II reaction center protein H
Photosystem II reaction center protein I-
Photosystem II reaction center protein J-
Photosystem II reaction center protein K-
Photosystem II reaction center protein L-
Photosystem II reaction center protein M-
33 kDa subunit of oxygen evolving system of photosystem II
23 kDa subunit of oxygen evolving system of photosystem II
Chlorophyll a-b binding protein, chloroplastic
Chlorophyll a-b binding protein, chloroplastic-
Photosystem II reaction center protein T-
Os02g0581100 protein- - -
Photosystem II 10 kDa polypeptide, chloroplastic-
Photosystem II reaction center W protein, chloroplastic-
Os07g0673550 protein-
Os08g0119800 protein
Photosystem II reaction center protein Z-

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
IPR022796Chlorophyll A-B binding proteinFamily
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
IPR022796Chlorophyll A-B binding proteinFamily
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
IPR022796Chlorophyll A-B binding proteinFamily
IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
IPR005867Photosystem II protein D1Family
IPR000484Photosynthetic reaction centre, L/MFamily
IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
IPR055266Photosystem II protein D1/D2Family
IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
IPR000932Photosystem antenna protein-likeFamily
IPR017486Photosystem II CP47 reaction centre proteinFamily
IPR036001Photosystem antenna protein-like superfamilyHomologous Superfamily
IPR000932Photosystem antenna protein-likeFamily
IPR005869Photosystem II CP43 reaction centre proteinFamily
IPR044900Photosystem II CP43 reaction centre protein superfamilyHomologous Superfamily
IPR036854Photosystem II protein D1/D2 superfamilyHomologous Superfamily
IPR005868Photosystem II D2Family
IPR000484Photosynthetic reaction centre, L/MFamily
IPR055265Photosynthetic reaction centre, L/M, conserved siteConserved Site
IPR055266Photosystem II protein D1/D2Family
IPR013081Photosystem II cytochrome b559, N-terminalDomain
IPR006217Photosystem II cytochrome b559, alpha subunitFamily
IPR013082Photosystem II cytochrome b559, alpha subunit, lumenal regionDomain
IPR037025Photosystem II cytochrome b559, alpha subunit superfamilyHomologous Superfamily
IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
IPR006241Photosystem II cytochrome b559, beta subunitFamily
IPR013081Photosystem II cytochrome b559, N-terminalDomain
IPR006216Photosystem II cytochrome b559, conserved siteConserved Site
IPR036863Photosystem II reaction centre protein H superfamilyHomologous Superfamily
IPR001056Photosystem II reaction centre protein HFamily
IPR037271Photosystem II PsbI superfamilyHomologous Superfamily
IPR003686Photosystem II PsbIFamily
IPR002682Photosystem II PsbJFamily
IPR037267Photosystem II PsbJ superfamilyHomologous Superfamily
IPR037270Photosystem II PsbK superfamilyHomologous Superfamily
IPR003687Photosystem II PsbKFamily
IPR003372Photosystem II PsbLFamily
IPR037266Photosystem II PsbL superfamilyHomologous Superfamily
IPR007826Photosystem II PsbMFamily
IPR037269Photosystem II PsbM superfamilyHomologous Superfamily
IPR011250Outer membrane protein/outer membrane enzyme PagP-like, beta-barrel superfamilyHomologous Superfamily
IPR002628Photosystem II extrinsic protein OFamily
IPR006311Twin-arginine translocation pathway, signal sequenceConserved Site
IPR002683PsbP, C-terminalDomain
IPR016123Mog1/PsbP, alpha/beta/alpha sandwichHomologous Superfamily
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
IPR022796Chlorophyll A-B binding proteinFamily
IPR001344Chlorophyll A-B binding protein, plant and chromistaFamily
IPR022796Chlorophyll A-B binding proteinFamily
IPR001743Photosystem II PsbTFamily
IPR037268Photosystem II PsbT superfamilyHomologous Superfamily
IPR040296Photosystem II 5kDa protein, chloroplasticFamily
IPR006814Photosystem II PsbRFamily
IPR009806Photosystem II PsbW, class 2Family
IPR009518Photosystem II PsbXFamily
IPR038760Photosystem II PsbY, plantFamily
IPR009388Photosystem II PsbYFamily
IPR036512Photosystem II PsbZ superfamilyHomologous Superfamily
IPR002644Photosystem II PsbZ, reaction centreFamily