1TDJ | pdb_00001tdj

THREONINE DEAMINASE (BIOSYNTHETIC) FROM E. COLI

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Structure Motif: Primary M-CSA Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1tdja1	Alpha and beta proteins (a/b)	Tryptophan synthase beta subunit-like PLP-dependent enzymes	Tryptophan synthase beta subunit-like PLP-dependent enzymes	Tryptophan synthase beta subunit-like PLP-dependent enzymes	Threonine deaminase	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)
A	d1tdja2	Alpha and beta proteins (a+b)	Ferredoxin-like	ACT-like	Allosteric threonine deaminase C-terminal domain	Allosteric threonine deaminase C-terminal domain	(Escherichia coli ) [TaxId: 562 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Tryptophan synthase beta subunit-like PLP-dependent enzymes	8020618	4000798	SCOP2 (2022-06-29)
A	SCOP2 Family	Allosteric threonine deaminase C-terminal domain	8023132	4001266	SCOP2 (2022-06-29)
A	SCOP2 Family	Allosteric threonine deaminase C-terminal domain	8023133	4001266	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Tryptophan synthase beta subunit-like PLP-dependent enzymes	8032998	3001427	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	ACT-like	8035512	3000006	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	ACT-like	8035513	3000006	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Thr_dehydrat_C	e1tdjA1	A: a+b two layers	X: Alpha-beta plaits	H: ACT-like (From Topology)	T: ACT-like	F: Thr_dehydrat_C	ECOD (1.6)
A	PALP	e1tdjA4	A: a/b three-layered sandwiches	X: Rossmann-like	H: Tryptophan synthase beta subunit-like PLP-dependent enzymes (From Topology)	T: Tryptophan synthase beta subunit-like PLP-dependent enzymes	F: PALP	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.50.1100	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
A	3.40.1020.10	Alpha Beta	3-Layer(aba) Sandwich	Biosynthetic Threonine Deaminase	domain 3	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00291	Pyridoxal-phosphate dependent enzyme (PALP)	Pyridoxal-phosphate dependent enzyme	-	Family
A	PF00585	C-terminal regulatory domain of Threonine dehydratase (Thr_dehydrat_C)	C-terminal regulatory domain of Threonine dehydratase	Threonine dehydratases Pfam:PF00291 all contain a carboxy terminal region. This region may have a regulatory role. Some members contain two copies of this region. This family is homologous to the Pfam:PF01842 domain.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	BIOSYNTHETIC THREONINE DEAMINASE	threonine deaminase activity lyase activity ammonia-lyase activity catalytic activity carbon-nitrogen lyase activity vitamin binding vitamin B6 binding pyridoxal phosphate binding ion binding binding anion binding heterocyclic compound binding small molecule binding amino acid binding	oxoacid metabolic process threonine metabolic process carboxylic acid metabolic process small molecule metabolic process metabolic process cellular process organic acid metabolic process small molecule biosynthetic process amino acid metabolic process primary metabolic process organic acid biosynthetic process alpha-amino acid metabolic process carboxylic acid biosynthetic process amino acid biosynthetic process oxoacid metabolic process threonine metabolic process carboxylic acid metabolic process small molecule metabolic process metabolic process cellular process organic acid metabolic process small molecule biosynthetic process amino acid metabolic process primary metabolic process organic acid biosynthetic process alpha-amino acid metabolic process carboxylic acid biosynthetic process amino acid biosynthetic process biosynthetic process isoleucine biosynthetic process branched-chain amino acid biosynthetic process branched-chain amino acid metabolic process isoleucine metabolic process alpha-amino acid biosynthetic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR036052	Tryptophan synthase beta chain-like, PALP domain superfamily	Homologous Superfamily
A	IPR001721	Threonine dehydratase, ACT-like domain	Domain
A	IPR038110	Threonine dehydratase, ACT-like domain superfamily	Homologous Superfamily
A	IPR005787	Threonine dehydratase, biosynthetic	Family
A	IPR050147	Serine/Threonine Dehydratase	Family
A	IPR045865	ACT-like domain	Homologous Superfamily
A	IPR000634	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	Binding Site
A	IPR001926	Tryptophan synthase beta chain-like, PALP domain	Domain

Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage

Chains	Enzyme Name	Description	Catalytic Residues
A	threonine ammonia-lyase (biosynthetic) M-CSA #886	Catalyses the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerises to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the non-enzymatic hydrolysis of the enamine/imine intermediates to form 2-ketobutyrate and free ammonia.	Defined by 2 residues: LYS:A-62SER:A-315 \| Explore in 3D: M-CSA Motif Definition Search M-CSA Motif EC: 4.2.1.16 (PDB Primary Data) Search M-CSA Motif + EC 4.2.1.16 EC: 4.3.1.19 (UniProt) Search M-CSA Motif + EC 4.3.1.19

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.