1QMO | pdb_00001qmo

Structure of FRIL, a legume lectin that delays hematopoietic progenitor maturation

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
E	d1qmo.1	All beta proteins	Concanavalin A-like lectins/glucanases	Concanavalin A-like lectins/glucanases	Legume lectins	Legume lectin	(Lablab purpureus ) [TaxId: 35936 ],	SCOPe (2.08)
F	d1qmo.2	All beta proteins	Concanavalin A-like lectins/glucanases	Concanavalin A-like lectins/glucanases	Legume lectins	Legume lectin	(Lablab purpureus ) [TaxId: 35936 ],	SCOPe (2.08)
G	d1qmo.3	All beta proteins	Concanavalin A-like lectins/glucanases	Concanavalin A-like lectins/glucanases	Legume lectins	Legume lectin	(Lablab purpureus ) [TaxId: 35936 ],	SCOPe (2.08)
H	d1qmo.4	All beta proteins	Concanavalin A-like lectins/glucanases	Concanavalin A-like lectins/glucanases	Legume lectins	Legume lectin	(Lablab purpureus ) [TaxId: 35936 ],	SCOPe (2.08)
A	d1qmo.1	All beta proteins	Concanavalin A-like lectins/glucanases	Concanavalin A-like lectins/glucanases	Legume lectins	Legume lectin	(Lablab purpureus ) [TaxId: 35936 ],	SCOPe (2.08)
B	d1qmo.2	All beta proteins	Concanavalin A-like lectins/glucanases	Concanavalin A-like lectins/glucanases	Legume lectins	Legume lectin	(Lablab purpureus ) [TaxId: 35936 ],	SCOPe (2.08)
C	d1qmo.3	All beta proteins	Concanavalin A-like lectins/glucanases	Concanavalin A-like lectins/glucanases	Legume lectins	Legume lectin	(Lablab purpureus ) [TaxId: 35936 ],	SCOPe (2.08)
D	d1qmo.4	All beta proteins	Concanavalin A-like lectins/glucanases	Concanavalin A-like lectins/glucanases	Legume lectins	Legume lectin	(Lablab purpureus ) [TaxId: 35936 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Legume lectins	8071043	4000327	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Concanavalin A-like lectins/glucanases	8071044	3000120	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Concanavalin A-like lectins/glucanases	8071044	3000120	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Concanavalin A-like lectins/glucanases	8071044	3000120	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Concanavalin A-like lectins/glucanases	8071044	3000120	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
E		e1qmoE01	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (develop294)
A		e1qmoA01	A: alpha bundles	X: RNase A-like	H: RNase A-like	T: RNase A-like	F:	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
E	2.60.40.4220	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
F	2.60.40.4220	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
G	2.60.40.4220	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
H	2.60.40.4220	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E, F, G, H	MANNOSE BINDING LECTIN, FRIL	binding carbohydrate binding	-	membrane-bounded organelle storage vacuole protein storage vacuole lumen intracellular anatomical structure plant-type vacuole lumen membrane-enclosed lumen vacuolar lumen vacuole intracellular membrane-bounded organelle intracellular organelle lumen protein storage vacuole intracellular organelle cellular anatomical structure organelle lumen membrane-bounded organelle storage vacuole protein storage vacuole lumen intracellular anatomical structure plant-type vacuole lumen membrane-enclosed lumen vacuolar lumen vacuole intracellular membrane-bounded organelle intracellular organelle lumen protein storage vacuole intracellular organelle cellular anatomical structure organelle lumen organelle plant-type vacuole cytoplasm
A, B, C, D	MANNOSE BINDING LECTIN, FRIL	binding carbohydrate binding	-	membrane-bounded organelle storage vacuole protein storage vacuole lumen intracellular anatomical structure plant-type vacuole lumen membrane-enclosed lumen vacuolar lumen vacuole intracellular membrane-bounded organelle intracellular organelle lumen protein storage vacuole intracellular organelle cellular anatomical structure organelle lumen membrane-bounded organelle storage vacuole protein storage vacuole lumen intracellular anatomical structure plant-type vacuole lumen membrane-enclosed lumen vacuolar lumen vacuole intracellular membrane-bounded organelle intracellular organelle lumen protein storage vacuole intracellular organelle cellular anatomical structure organelle lumen organelle plant-type vacuole cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E, F, G, H	IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	Homologous Superfamily
E, F, G, H	IPR001220	Legume lectin domain	Domain
E, F, G, H	IPR000985	Legume lectin, alpha chain, conserved site	Conserved Site
E, F, G, H	IPR050258	Leguminous Lectin	Family
E, F, G, H	IPR016363	Legume lectin	Family
E, F, G, H	IPR019825	Legume lectin, beta chain, Mn/Ca-binding site	Binding Site
A, B, C, D	IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	Homologous Superfamily
A, B, C, D	IPR001220	Legume lectin domain	Domain
A, B, C, D	IPR000985	Legume lectin, alpha chain, conserved site	Conserved Site
A, B, C, D	IPR050258	Leguminous Lectin	Family
A, B, C, D	IPR016363	Legume lectin	Family
A, B, C, D	IPR019825	Legume lectin, beta chain, Mn/Ca-binding site	Binding Site

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.