1LOC | pdb_00001loc

INTERACTION OF A LEGUME LECTIN WITH TWO COMPONENTS OF THE BACTERIAL CELL WALL

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
J [auth G]	d1loc.4	All beta proteins	Concanavalin A-like lectins/glucanases	Concanavalin A-like lectins/glucanases	Legume lectins	Legume lectin	(Lathyrus ochrus ) [TaxId: 3858 ],	SCOPe (2.08)
G [auth E]	d1loc.3	All beta proteins	Concanavalin A-like lectins/glucanases	Concanavalin A-like lectins/glucanases	Legume lectins	Legume lectin	(Lathyrus ochrus ) [TaxId: 3858 ],	SCOPe (2.08)
D [auth C]	d1loc.2	All beta proteins	Concanavalin A-like lectins/glucanases	Concanavalin A-like lectins/glucanases	Legume lectins	Legume lectin	(Lathyrus ochrus ) [TaxId: 3858 ],	SCOPe (2.08)
A	d1loc.1	All beta proteins	Concanavalin A-like lectins/glucanases	Concanavalin A-like lectins/glucanases	Legume lectins	Legume lectin	(Lathyrus ochrus ) [TaxId: 3858 ],	SCOPe (2.08)
K [auth H]	d1loc.4	All beta proteins	Concanavalin A-like lectins/glucanases	Concanavalin A-like lectins/glucanases	Legume lectins	Legume lectin	(Lathyrus ochrus ) [TaxId: 3858 ],	SCOPe (2.08)
H [auth F]	d1loc.3	All beta proteins	Concanavalin A-like lectins/glucanases	Concanavalin A-like lectins/glucanases	Legume lectins	Legume lectin	(Lathyrus ochrus ) [TaxId: 3858 ],	SCOPe (2.08)
E [auth D]	d1loc.2	All beta proteins	Concanavalin A-like lectins/glucanases	Concanavalin A-like lectins/glucanases	Legume lectins	Legume lectin	(Lathyrus ochrus ) [TaxId: 3858 ],	SCOPe (2.08)
B	d1loc.1	All beta proteins	Concanavalin A-like lectins/glucanases	Concanavalin A-like lectins/glucanases	Legume lectins	Legume lectin	(Lathyrus ochrus ) [TaxId: 3858 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
J [auth G]	SCOP2B Superfamily	Concanavalin A-like lectins/glucanases	8083702	3000120	SCOP2B (2022-06-29)
G [auth E]	SCOP2B Superfamily	Concanavalin A-like lectins/glucanases	8083702	3000120	SCOP2B (2022-06-29)
D [auth C]	SCOP2B Superfamily	Concanavalin A-like lectins/glucanases	8083702	3000120	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Concanavalin A-like lectins/glucanases	8083702	3000120	SCOP2B (2022-06-29)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
J [auth G]	2.60.120.200	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
G [auth E]	2.60.120.200	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
D [auth C]	2.60.120.200	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
A	2.60.120.200	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, D [auth C], G [auth E], J [auth G]	PF00139	Legume lectin domain (Lectin_legB)	Legume lectin domain		Domain
B, E [auth D], H [auth F], K [auth H]	PF00139	Legume lectin domain (Lectin_legB)	Legume lectin domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, D [auth C], G [auth E], J [auth G]	LEGUME ISOLECTIN I (ALPHA CHAIN)	binding D-mannose binding monosaccharide binding carbohydrate binding small molecule binding cation binding ion binding metal ion binding	-	-
B, E [auth D], H [auth F], K [auth H]	LEGUME ISOLECTIN I (BETA CHAIN)	binding D-mannose binding monosaccharide binding carbohydrate binding small molecule binding	-	-
C [auth 1], F [auth 2], I [auth 3], L [auth 4]	MURAMYL-DIPEPTIDE D-ALA-D-IGLN	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, D [auth C], G [auth E], J [auth G]	IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	Homologous Superfamily
A, D [auth C], G [auth E], J [auth G]	IPR001220	Legume lectin domain	Domain
A, D [auth C], G [auth E], J [auth G]	IPR050258	Leguminous Lectin	Family
A, D [auth C], G [auth E], J [auth G]	IPR019825	Legume lectin, beta chain, Mn/Ca-binding site	Binding Site
B, E [auth D], H [auth F], K [auth H]	IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	Homologous Superfamily
B, E [auth D], H [auth F], K [auth H]	IPR001220	Legume lectin domain	Domain
B, E [auth D], H [auth F], K [auth H]	IPR000985	Legume lectin, alpha chain, conserved site	Conserved Site

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
C [auth 1], F [auth 2], I [auth 3], L [auth 4]	DAL	RESID: AA0111 , AA0191 PSI-MOD : meso-lanthionine MOD:00120 , D-alanine (Ala) MOD:00198 , D-alanine (Ser) MOD:00858 , D-alanine MOD:00862
C [auth 1], F [auth 2], I [auth 3], L [auth 4]	ZGL	RESID: AA0111 , AA0191

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.