Annotations: 10QX

Cryo-EM structure of Rad1-Rad10

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B	PF03834	Binding domain of DNA repair protein Ercc1 (rad10/Swi10) (Rad10)	Binding domain of DNA repair protein Ercc1 (rad10/Swi10)	Ercc1 and XPF (xeroderma pigmentosum group F-complementing protein) are two structure-specific endonucleases of a class of seven containing an ERCC4 domain. Together they form an obligate complex that functions primarily in nucleotide excision repair ...	Ercc1 and XPF (xeroderma pigmentosum group F-complementing protein) are two structure-specific endonucleases of a class of seven containing an ERCC4 domain. Together they form an obligate complex that functions primarily in nucleotide excision repair (NER), a versatile pathway able to detect and remove a variety of DNA lesions induced by UV light and environmental carcinogens, and secondarily in DNA interstrand cross-link repair and telomere maintenance. This domain in fact binds simultaneously to both XPF and single-stranded DNA; this ternary complex explains the important role of Ercc1 in targeting its catalytic XPF partner to the NER pre-incision complex [3].	Domain
A	PF02732	ERCC4 domain (ERCC4)	ERCC4 domain	This domain is a family of nucleases. The family includes EME1 which is an essential component of a Holliday junction resolvase [2-3]. EME1 interacts with MUS81 to form a DNA structure-specific endonuclease.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	DNA repair protein RAD10	DNA binding binding damaged DNA binding nucleic acid binding single-stranded DNA binding	nucleobase-containing compound metabolic process DNA recombination mitotic recombination metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process cellular response to stimulus mismatch repair sexual reproduction response to stimulus reproductive process nucleobase-containing compound metabolic process DNA recombination mitotic recombination metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process cellular response to stimulus mismatch repair sexual reproduction response to stimulus reproductive process meiotic cell cycle meiotic cell cycle process meiotic mismatch repair meiosis I cell cycle process cellular response to stress DNA damage response response to stress cell cycle cell cycle process DNA repair nucleotide-excision repair, DNA damage recognition chromosome organization cellular component organization organelle organization nucleotide-excision repair cellular component organization or biogenesis removal of nonhomologous ends double-strand break repair double-strand break repair via single-strand annealing double-strand break repair via single-strand annealing, removal of nonhomologous ends DNA amplification nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid biosynthetic process biosynthetic process DNA biosynthetic process	protein-containing complex catalytic complex intracellular protein-containing complex endonuclease complex membrane-bounded organelle intracellular anatomical structure nucleus nuclear protein-containing complex intracellular membrane-bounded organelle nucleotide-excision repair factor 1 complex intracellular organelle cellular anatomical structure organelle nucleotide-excision repair complex
A	DNA repair protein RAD1	DNA endonuclease activity endonuclease activity catalytic activity, acting on DNA nuclease activity catalytic activity, acting on a nucleic acid catalytic activity DNA nuclease activity DNA binding binding damaged DNA binding nucleic acid binding single-stranded DNA binding	nucleobase-containing compound metabolic process DNA recombination mitotic recombination metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process cellular response to stimulus response to stimulus nucleotide-excision repair involved in interstrand cross-link repair cellular response to stress DNA damage response nucleobase-containing compound metabolic process DNA recombination mitotic recombination metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process cellular response to stimulus response to stimulus nucleotide-excision repair involved in interstrand cross-link repair cellular response to stress DNA damage response nucleotide-excision repair response to stress interstrand cross-link repair DNA repair mismatch repair sexual reproduction reproductive process meiotic cell cycle meiotic cell cycle process meiotic mismatch repair meiosis I cell cycle process cell cycle cell cycle process nucleotide-excision repair, DNA damage recognition chromosome organization cellular component organization organelle organization cellular component organization or biogenesis homologous recombination resolution of meiotic recombination intermediates meiosis I meiotic nuclear division reciprocal homologous recombination organelle fission reciprocal meiotic recombination nuclear division removal of nonhomologous ends double-strand break repair double-strand break repair via single-strand annealing double-strand break repair via single-strand annealing, removal of nonhomologous ends DNA amplification nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid biosynthetic process biosynthetic process DNA biosynthetic process	protein-containing complex catalytic complex intracellular protein-containing complex endonuclease complex membrane-bounded organelle intracellular anatomical structure nucleus nuclear protein-containing complex intracellular membrane-bounded organelle nucleotide-excision repair factor 1 complex intracellular organelle cellular anatomical structure organelle nucleotide-excision repair complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR011335	Restriction endonuclease type II-like	Homologous Superfamily
B	IPR047260	ERCC1-like, central domain	Domain
B	IPR004579	ERCC1/RAD10/SWI10 family	Family
A	IPR011335	Restriction endonuclease type II-like	Homologous Superfamily
A	IPR006167	DNA repair protein XPF	Family
A	IPR010994	RuvA domain 2-like	Homologous Superfamily
A	IPR047520	DNA repair endonuclease XPF, nuclease domain	Domain
A	IPR006166	ERCC4 domain	Domain