Ensemble model of ligand-free SARS-CoV-2 NSP10-NSP14 (ExoN) and in complex with partially bound VT00123
Krojer, T., Kozielski, F., Sele, C., Nyblom, M., Fisher, S.Z., Knecht, W.To be published.
Experimental Data Snapshot
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Non-structural protein 10 | 131 | Severe acute respiratory syndrome coronavirus 2 | Mutation(s): 0  | ![]() | |
UniProt | |||||
Find proteins for P0DTC1 (Severe acute respiratory syndrome coronavirus 2) Explore P0DTC1  Go to UniProtKB:  P0DTC1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0DTC1 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Guanine-N7 methyltransferase nsp14 | 290 | Severe acute respiratory syndrome coronavirus 2 | Mutation(s): 0  Gene Names: rep, 1a-1b EC: 2.1.1.56 (PDB Primary Data), 3.1.13 (PDB Primary Data) | ![]() | |
UniProt | |||||
Find proteins for P0DTD1 (Severe acute respiratory syndrome coronavirus 2) Explore P0DTD1  Go to UniProtKB:  P0DTD1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0DTD1 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
A1IGS (Subject of Investigation/LOI) Query on A1IGS | I [auth B] | (4R)-4-pyridin-4-ylpyrrolidin-2-one C9 H10 N2 O NGECHVBQXAJIFW-UHFFFAOYSA-N | |||
A1IGT (Subject of Investigation/LOI) Query on A1IGT | E [auth A] | (4S)-4-pyridin-4-ylpyrrolidin-2-one C9 H10 N2 O NGECHVBQXAJIFW-MRVPVSSYSA-N | |||
DMS Query on DMS | F [auth B] | DIMETHYL SULFOXIDE C2 H6 O S IAZDPXIOMUYVGZ-UHFFFAOYSA-N | |||
ZN Query on ZN | C [auth A], D [auth A], G [auth B], H [auth B] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 44.059 | α = 90 |
b = 99.711 | β = 114.73 |
c = 51.182 | γ = 90 |
Software Name | Purpose |
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BUSTER | refinement |
autoPROC | data processing |
XDS | data reduction |
Aimless | data scaling |
TRUNCATE | data processing |
DIMPLE | phasing |
Funding Organization | Location | Grant Number |
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Not funded | -- |