9C26 | pdb_00009c26

Cyan thermostable protein (CTP) 0.5 at pH 6.5


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 
    0.270 (Depositor), 0.270 (DCC) 
  • R-Value Work: 
    0.218 (Depositor), 0.218 (DCC) 
  • R-Value Observed: 
    0.220 (Depositor) 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


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Literature

Cyan Thermal Proteins Derived From Thermal Green Protein.

Jurkowski, A.Sitapara, D.Brown, A.Ball, S.Norman, T.Jones, A.Gilbert, J.Criblez, T.Yates, A.Bansal, S.DeVore, N.M.

(2025) Proteins 

  • DOI: https://doi.org/10.1002/prot.70003
  • Primary Citation of Related Structures:  
    9C23, 9C25, 9C26, 9CXP

  • PubMed Abstract: 

    Thermal green protein (TGP) is a consensus derived green fluorescent protein designed with extreme thermostability, high pH and chemical stability, as well as high quantum yield for use in more severe conditions. Our goal is to design a cyan version of TGP that maintains these characteristics. We were able to shift the fluorescence wavelength of TGP from green to cyan creating CTP 0.0 by incorporating a single chromophore mutation, Y67W, but this mutation also decreased the quantum yield to 0.056. Further mutations were incorporated to increase the quantum yield through incorporating hydrogen bonding interactions to the chromophore and to remove a kink present in beta strand seven. These proteins, CTP 0.5 (Y67W I199T) and CTP 1.0 (Y67W I199T W143L E144I P145D S146A), increased the quantum yield to 0.07 and 0.37, respectively and improved stability characteristics. CTP 0.75 incorporated another chromophore mutation into CTP 1.0 (Q66E) to increase the stability characteristics but decreased the quantum yield to 0.22. The CTP 1.0 cyan protein was also compared to mTurquoise2, one of the current best cyan fluorescent proteins based on GFP. CTP 1.0 had comparable chemical stability and improved acid stability. Crystal structures were solved for CTP 0.5 at pH 6.5 (2.00 Å), CTP 1.0 at pH 6.5 (1.70 Å), CTP 1.0 at pH 8.5 (1.60 Å), and CTP 0.75 at pH 7.4 (1.70 Å). Structural analysis of the proteins showed that while improvement to beta strand seven was unsuccessful, the increase in quantum yield is likely due to the incorporation of the T199 residue and subsequent hydrogen bonding interaction improvements with the chromophore.


  • Organizational Affiliation
    • Department of Chemistry and Biochemistry, Missouri State University, Springfield, Missouri, USA.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Cyan thermostable protein 0.5249synthetic constructMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
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  • Reference Sequence
Small Molecules
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
4M9
Query on 4M9
A
L-PEPTIDE LINKINGC18 H17 N5 O4GLN, TRP, GLY
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free:  0.270 (Depositor), 0.270 (DCC) 
  • R-Value Work:  0.218 (Depositor), 0.218 (DCC) 
  • R-Value Observed: 0.220 (Depositor) 
Space Group: P 2 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 39.481α = 90
b = 76.491β = 90
c = 81.021γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
CrysalisProdata reduction
SCALAdata scaling
PHENIXphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Science Foundation (NSF, United States)United States2117129

Revision History  (Full details and data files)

  • Version 1.0: 2025-07-09
    Type: Initial release