8UAG | pdb_00008uag

Sucrose-phosphate synthase-like protein from Leishmania major

• PDB DOI: https://doi.org/10.2210/pdb8UAG/pdb

• Classification: SUGAR BINDING PROTEIN
• Organism(s): Leishmania major
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2023-09-21 Released: 2024-12-18 
• Deposition Author(s): Gorman, M.A., Parker, M.W., McConville, M.J.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.29 Å
• R-Value Free: 
  0.238 (Depositor), 0.238 (DCC) 
• R-Value Work: 
  0.156 (Depositor), 0.156 (DCC) 
• R-Value Observed: 
  0.160 (Depositor) 

Starting Model: in silico

Literature

Sucrose-phosphate synthase-like protein from Leishmania major

Gorman, M.A., Parker, M.W., McConville, M.J., Sernee, F., Ralton, J.E., Vinzenz, V., Sani, M., Soerianto, T.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 53.36 kDa 
• Atom Count: 3,839 
• Modeled Residue Count: 459 
• Deposited Residue Count: 466 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Sucrose-phosphate synthase-like protein	A	466	Leishmania major	Mutation(s): 0  Gene Names: LMJF_16_0950 EC: 2.4.1.14
UniProt
Find proteins for Q4QES5 (Leishmania major) Explore Q4QES5  Go to UniProtKB:  Q4QES5

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
UPG (Subject of Investigation/LOI)	E [auth A]	URIDINE-5'-DIPHOSPHATE-GLUCOSE C15 H24 N2 O17 P2 HSCJRCZFDFQWRP-JZMIEXBBSA-N
EDO	C [auth A], D [auth A]	1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N
MG	B [auth A]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.29 Å
• R-Value Free:  0.238 (Depositor), 0.238 (DCC) 
• R-Value Work:  0.156 (Depositor), 0.156 (DCC) 
• R-Value Observed: 0.160 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 40.231	α = 90
b = 59.689	β = 90
c = 177.638	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
Aimless	data scaling
PHASER	phasing
XDS	data reduction

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-12-18 
Deposition Author(s): Gorman, M.A., Parker, M.W., McConville, M.J.

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Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2024-12-18
  Type: Initial release